View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12964_high_7 (Length: 445)
Name: NF12964_high_7
Description: NF12964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12964_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 359; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 29 - 428
Target Start/End: Original strand, 32601010 - 32601405
Alignment:
| Q |
29 |
tgaagaaaataagtgagttatcatattaattttacctattccagttatcttcaatatctccagttgttctccaactatttcccacacttttggcccatgt |
128 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
32601010 |
tgaagaaaataagtgagttatcatattaattttacctattccagttatcttcaatatctcctgttgttctccaactatttcccacacttttggcccatgt |
32601109 |
T |
|
| Q |
129 |
agctggatcttcccatcccctatgtttcaaaaaagaaattagaatgaaatagaaaatgaaatatcaattatgtatgagaaacattatcaccaatccagct |
228 |
Q |
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||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32601110 |
agcaggatcttcccatcccctatgtttcaaaaaagaaattataatgaaatataaaatgaaatatcaattatgtatgagaaacattatcaccaatccagct |
32601209 |
T |
|
| Q |
229 |
caccattcacacatagagaagaagattggccttccagattttaataaggcttcactcattggtggatacctgatttacacaacgtatgaaactagtaagt |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32601210 |
caccattcacacatagagaagaagattggccttccagattttaataaggcttcactcattggtggatacctgatttacacaacgtatgaaactagtaagt |
32601309 |
T |
|
| Q |
329 |
actattttttacaaaatactaattaagtatgttgatatacctattttcatttgaagaaaataaattaaatacctttctctaacacttataccattatttt |
428 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
32601310 |
actattttttacaaaat----attaagtatgttgatatacctattttaatttgaagaaaataaattaaatacctttctctaacgcttataccattatttt |
32601405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 41 - 426
Target Start/End: Original strand, 32590551 - 32590934
Alignment:
| Q |
41 |
gtgagttatcatattaattttacctattccagttatcttcaatatctccagttgttctccaactatttcccacacttttggcccatgtagctggatcttc |
140 |
Q |
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|||| |||||||||||||||||||||| ||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32590551 |
gtgaattatcatattaattttacctatgccaattatctttaatatctcctgttgttctccaactatttcccacacttttggcccatgttgctggatcttc |
32590650 |
T |
|
| Q |
141 |
ccatcccctatgtttcaaaaaagaaattagaatgaaatagaaaatgaaatatcaattatgtatgagaaacattatcaccaatccagctcaccattcacac |
240 |
Q |
| |
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| |||||||||||||||||||| || || ||| |||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||| |
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| T |
32590651 |
ctttcccctatgtttcaaaaaagcaagtataataaaatagaaaatgaaatatcaattatgtatgagaaacattatcactaattcaactcaccattcacac |
32590750 |
T |
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| Q |
241 |
atagagaagaagattggccttccagattttaataaggcttcactcattggtggatacctgatttacacaacgtatgaaactagtaagtacta--tttttt |
338 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
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| T |
32590751 |
acagagaagaagattggccttccagattttaataaggcttcactcattggtggatacctgatttacacaacgtatgaaactagtgagtactatttttttt |
32590850 |
T |
|
| Q |
339 |
acaaaatactaattaagtatgttgatatacctattttcatttgaagaaaataaattaaatacctttctctaacacttataccattatt |
426 |
Q |
| |
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||||||| ||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
32590851 |
acaaaat----attaagtatgtagatatacctatttgcatttgaagaacataaattaaatacctttctctaacgcttataccattatt |
32590934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 227 - 299
Target Start/End: Complemental strand, 24883258 - 24883186
Alignment:
| Q |
227 |
ctcaccattcacacatagagaagaagattggccttccagattttaataaggcttcactcattggtggatacct |
299 |
Q |
| |
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||||||||||||||| |||| ||||||||||||||||||||| || ||| ||||||| |||| |||| ||||| |
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| T |
24883258 |
ctcaccattcacacaaagagtagaagattggccttccagattgtactaaagcttcacccattcgtgggtacct |
24883186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 24883434 - 24883380
Alignment:
| Q |
62 |
acctattccagttatcttcaatatctccagttgttctccaactatttcccacact |
116 |
Q |
| |
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|||||| ||| |||||||| |||||| |||||||||||||||||||||||||| |
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| T |
24883434 |
acctatcccatttatcttcgatatctgatgttgttctccaactatttcccacact |
24883380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 107; Significance: 2e-53; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 62 - 304
Target Start/End: Original strand, 34578391 - 34578633
Alignment:
| Q |
62 |
acctattccagttatcttcaatatctccagttgttctccaactatttcccacacttttggcccatgtagctggatcttcccatcccctatgtttcaaaaa |
161 |
Q |
| |
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|||| ||||| |||||||| ||||| || || |||||||||||||||||||||||||||||||| || || ||||||||||||||||| ||| | ||| |
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| T |
34578391 |
acctcttccaattatcttctatatcacccgtggttctccaactatttcccacacttttggcccacgttgcaggatcttcccatcccctgaattttagaaa |
34578490 |
T |
|
| Q |
162 |
agaaattagaatgaaatagaaaatgaaatatcaattatgtatgagaaacattatcaccaatccagctcaccattcacacatagagaagaagattggcctt |
261 |
Q |
| |
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|||| | || ||||||||||||||||||| |||||||||||||||| | |||| || ||||||||||||||||||||||||||||||||||| |
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| T |
34578491 |
agaattaagtgagaaatagaaaatgaaatattgtttatgtatgagaaacaccgcgatcaattcaactcaccattcacacatagagaagaagattggcctt |
34578590 |
T |
|
| Q |
262 |
ccagattttaataaggcttcactcattggtggatacctgattt |
304 |
Q |
| |
|
|| || |||||||| ||||||||||||||||||||||| |||| |
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| T |
34578591 |
ccggagtttaataaagcttcactcattggtggatacctaattt |
34578633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 60 - 299
Target Start/End: Original strand, 34594089 - 34594332
Alignment:
| Q |
60 |
ttacctattccagttatcttcaatatctccagttgttctccaactatttcccacacttttggcccatgtagctggatcttcccatcccctatgtttcaaa |
159 |
Q |
| |
|
|||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||| || | |
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| T |
34594089 |
ttacctattccaattatcttcaatatcacctgttgttctccaactatttcccacactttttgcccatgttgctgggtcttcccatcccctatgttccaca |
34594188 |
T |
|
| Q |
160 |
aaagaaattagaatgaaatagaaaatg---aaatatcaattatgtatgagaaacattatcaccaa-tccagctcaccattcacacatagagaagaagatt |
255 |
Q |
| |
|
||| | || | | |||||| || ||||| | | ||||||||||||||| || || | || |||||||||||||||| |||||||||||| |
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| T |
34594189 |
aaattatgtaaaggctagtagaaattggaataatattattcatgtatgagaaacatcatatttaatttcaactcaccattcacacattgagaagaagatt |
34594288 |
T |
|
| Q |
256 |
ggccttccagattttaataaggcttcactcattggtggatacct |
299 |
Q |
| |
|
| |||||||||||| | |||||||||||||||||| || ||||| |
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|
| T |
34594289 |
gaccttccagatttcattaaggcttcactcattggcgggtacct |
34594332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 227 - 329
Target Start/End: Original strand, 35124249 - 35124351
Alignment:
| Q |
227 |
ctcaccattcacacatagagaagaagattggccttccagattttaataaggcttcactcattggtggatacctgatttacacaacgtatgaaactagtaa |
326 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||| ||||| ||||||| || |||||||||| ||| |
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| T |
35124249 |
ctcaccattcacacatagagaagaagattggtcttccagagtttaacaaggcttcactcattggtgggtacctaatttacaaaatttatgaaactaataa |
35124348 |
T |
|
| Q |
327 |
gta |
329 |
Q |
| |
|
||| |
|
|
| T |
35124349 |
gta |
35124351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 392 - 428
Target Start/End: Original strand, 35124405 - 35124441
Alignment:
| Q |
392 |
attaaatacctttctctaacacttataccattatttt |
428 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |
|
|
| T |
35124405 |
attaaatacctttctctaacgcttataccattatttt |
35124441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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