View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12964_high_9 (Length: 383)
Name: NF12964_high_9
Description: NF12964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12964_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 27099678 - 27099331
Alignment:
| Q |
1 |
acactgtaaatatcctatccaaccacaccctttcatgtcatttcaaaattaatatgacctccttcaaggaatggtattt-ccttccatcaaaattttgaa |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
27099678 |
acactgtaaatatcctatccaaccacaccctttcatgtcatttcaaaattaatatgacctccttcaaggaatggtattttccttccatcaaaattttgaa |
27099579 |
T |
|
| Q |
100 |
acattcatgtagacaatacattcgtggtcgttggatcaagattaaatggtttaaatttcaatgctatttttaattctttttaaatagaaaataccaaatt |
199 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27099578 |
gcattcatgtagacaatacattcgtggtcgttggattaagattaaatggtttaaatttcaatgctatttttaattctttttaaatagaaaataccaaatt |
27099479 |
T |
|
| Q |
200 |
aaaagtttagacggtttaatcttgattcaacggcatagatgtgttgactgtgtaaacgcgtcaaaatttgagtgcatgcactcatcatggtccctcattc |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27099478 |
aaaagtttagacggtttaatcttgattcaacggcatagatgtgttggctgtgtaaacgcgtcaaaatttgagtgcatgcactcatcatggtccctcattc |
27099379 |
T |
|
| Q |
300 |
attcattatatagttcccataaacactaaatgcacacaataacttaac |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27099378 |
attcattatatagttcccataaacactaaatgcacacaataacttaac |
27099331 |
T |
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