View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12964_low_1 (Length: 758)

Name: NF12964_low_1
Description: NF12964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12964_low_1
NF12964_low_1
[»] chr7 (4 HSPs)
chr7 (10-739)||(28071261-28071990)
chr7 (479-515)||(1668359-1668395)
chr7 (458-522)||(34925254-34925318)
chr7 (453-548)||(23117277-23117372)
[»] chr2 (6 HSPs)
chr2 (453-504)||(29378603-29378654)
chr2 (453-552)||(38434153-38434252)
chr2 (459-580)||(27309609-27309730)
chr2 (479-548)||(44460379-44460448)
chr2 (458-501)||(35849472-35849515)
chr2 (458-499)||(24098479-24098520)
[»] chr5 (1 HSPs)
chr5 (486-552)||(42440139-42440205)
[»] chr3 (2 HSPs)
chr3 (519-603)||(28802757-28802841)
chr3 (479-552)||(36303135-36303208)
[»] chr8 (1 HSPs)
chr8 (459-522)||(26466092-26466155)
[»] chr6 (1 HSPs)
chr6 (460-505)||(25192095-25192140)
[»] chr4 (1 HSPs)
chr4 (458-504)||(48244389-48244435)
[»] chr1 (1 HSPs)
chr1 (458-512)||(10363450-10363504)
[»] scaffold0137 (1 HSPs)
scaffold0137 (458-499)||(36033-36074)


Alignment Details
Target: chr7 (Bit Score: 710; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 710; E-Value: 0
Query Start/End: Original strand, 10 - 739
Target Start/End: Complemental strand, 28071990 - 28071261
Alignment:
Q  10 attattctgaaaaattgaaggtaacattgattagagataaggctttaaaagagtttataaagcttaaacaattgtcacttcataagtcgaattttgtagg 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28071990 attattctgaaaaattgaaggtaacattgattagagataaggctttaaaagagtttataaagcttaaacaattgtcacttcataagtcgaattttgtagg 28071891  T
Q  110 gatgagttaggcctaaaatctaatatggtgtcaatttctacaataaatgcccaatagccttggacacgaataggtgtattggaaaaagtccaagtcccgt 209  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  28071890 gatgagttaggcctaaaacctaatgtggtgtcaatttctacaataaatgcccaatagccttggacacgaataggtgtattggaaaaagtccaagtccagt 28071791  T
Q  210 attggctagtgatgcaacttaaataaagctttcgcaatcctctctttacaattcgattttatgggactaagttatacctaaaatctaagagtcgcaatta 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28071790 attggctagtgatgcaacttaaataaagctttcgcaatcctctctttacaattcgattttatgggactaagttatacctaaaatctaagagtcgcaatta 28071691  T
Q  310 tgtttagaattttgagggtcttttcaagaatatccctcaaatcatagggttggatttagactacacccttcatgtaaaagaattttaagaataactattg 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28071690 tgtttagaattttgagggtcttttcaagaatatccctcaaatcatagggttggatttagactacacccttcatgtaaaagaattttaagaataactattg 28071591  T
Q  410 tctttttactaaactctatagttataatatcataagataatttcagtattgtcaatcgcagattgtgggaaatagcggtttgttcaaattccactatgtt 509  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28071590 tctttttactaaactctatagttataatatcataaaataatttcagtattgtcaatcgcagattgtgggaaatagcggtttgttcaaattccactatgtt 28071491  T
Q  510 acaatgttatagcactgccataaccgctatttgacaacactttatattatatcatatatcgcggaatagtactggtttgttaaaattccgctatgtaact 609  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28071490 acaatgttatagcactgccataaccgctatttgacaacactttatattatatcatatatcgcggaatagtactggtttgttaaaattccgctatgcaact 28071391  T
Q  610 gtgctgctatagccactatgtggcagcacaaataaagacctgtgagtttaacatgaatggataagtagaacacaaacttgtttaagaagtaacagaaaac 709  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28071390 gtgctgctatagccactatgtggcagcacaaataaagacctgtgagtttaacatgaatggataagtagaacacaaacttgtttaagaagtaacagaaaac 28071291  T
Q  710 ttacatgctcacattgtaatacaggcaagg 739  Q
    ||||||||||||||||||||||||||||||    
T  28071290 ttacatgctcacattgtaatacaggcaagg 28071261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 479 - 515
Target Start/End: Original strand, 1668359 - 1668395
Alignment:
Q  479 aaatagcggtttgttcaaattccactatgttacaatg 515  Q
    ||||||||||||||||||||||||||||| |||||||    
T  1668359 aaatagcggtttgttcaaattccactatgctacaatg 1668395  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 458 - 522
Target Start/End: Original strand, 34925254 - 34925318
Alignment:
Q  458 ttgtcaatcgcagattgtgggaaatagcggtttgttcaaattccactatgttacaatgttatagc 522  Q
    |||||||| |||||| |||| ||||||| ||||||||||||||  ||||| ||||||| ||||||    
T  34925254 ttgtcaattgcagatcgtggaaaatagcagtttgttcaaattctgctatgctacaatgctatagc 34925318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 453 - 548
Target Start/End: Original strand, 23117277 - 23117372
Alignment:
Q  453 cagtattgtcaatcgcagattgtgggaaatagcggtttgttcaaattccactatgttacaatgttatagcactgccataaccgctatttgacaaca 548  Q
    |||| |||||||| || ||||| || |||||| |||||||||||||||| ||| || ||| || |||||| |||| ||| || |||||| ||||||    
T  23117277 cagtgttgtcaattgcggattgcggaaaatagtggtttgttcaaattccgctacgtgacagtgctatagcgctgctatacccactatttcacaaca 23117372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 453 - 504
Target Start/End: Complemental strand, 29378654 - 29378603
Alignment:
Q  453 cagtattgtcaatcgcagattgtgggaaatagcggtttgttcaaattccact 504  Q
    |||| ||||||||||| ||| |||||||||||||||||||||||||||||||    
T  29378654 cagtgttgtcaatcgcggatcgtgggaaatagcggtttgttcaaattccact 29378603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 453 - 552
Target Start/End: Complemental strand, 38434252 - 38434153
Alignment:
Q  453 cagtattgtcaatcgcagattgtgggaaatagcggtttgttcaaattccactatgttacaatgttatagcactgccataaccgctatttgacaacacttt 552  Q
    |||| ||||||||||||||    || ||||||| ||||||||||||||  |||||||||| || ||||||| ||| |||| |||||||| ||||||||||    
T  38434252 cagtgttgtcaatcgcagaacacggaaaatagcagtttgttcaaattctgctatgttacagtgctatagcaatgctataatcgctatttaacaacacttt 38434153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 459 - 580
Target Start/End: Complemental strand, 27309730 - 27309609
Alignment:
Q  459 tgtcaatcgcagattgtgggaaatagcggtttgttcaaattccactatgttacaatgttatagcactgccataaccgctatttgacaacactttatatta 558  Q
    |||||||| |||||||  | ||||| ||||||||||| ||||  ||||| |||| || |||||||||   ||| ||||||||||||||||||||||| ||    
T  27309730 tgtcaatcacagattgctgaaaatatcggtttgttcatattctgctatgctacagtgctatagcactattatatccgctatttgacaacactttatacta 27309631  T
Q  559 tatcatatatcgcggaatagta 580  Q
     ||| | |||||  ||||||||    
T  27309630 aatcgtgtatcgtagaatagta 27309609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 479 - 548
Target Start/End: Complemental strand, 44460448 - 44460379
Alignment:
Q  479 aaatagcggtttgttcaaattccactatgttacaatgttatagcactgccataaccgctatttgacaaca 548  Q
    ||||||||||||||||||||| ||||||| |||||||||  ||||| || ||||  ||||||||||||||    
T  44460448 aaatagcggtttgttcaaatttcactatgctacaatgttgaagcaccgcaataattgctatttgacaaca 44460379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 458 - 501
Target Start/End: Original strand, 35849472 - 35849515
Alignment:
Q  458 ttgtcaatcgcagattgtgggaaatagcggtttgttcaaattcc 501  Q
    |||||||| ||||||||||| |||||||||||||||||||||||    
T  35849472 ttgtcaattgcagattgtggaaaatagcggtttgttcaaattcc 35849515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 458 - 499
Target Start/End: Complemental strand, 24098520 - 24098479
Alignment:
Q  458 ttgtcaatcgcagattgtgggaaatagcggtttgttcaaatt 499  Q
    ||||||||| |||||||||| |||||| ||||||||||||||    
T  24098520 ttgtcaatcacagattgtggaaaataggggtttgttcaaatt 24098479  T

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Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 486 - 552
Target Start/End: Complemental strand, 42440205 - 42440139
Alignment:
Q  486 ggtttgttcaaattccactatgttacaatgttatagcactgccataaccgctatttgacaacacttt 552  Q
    |||||||||||||||| ||||| |||| |||||||||||||| ||| || ||||||||||| |||||    
T  42440205 ggtttgttcaaattccgctatgctacagtgttatagcactgctatagcctctatttgacaaaacttt 42440139  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 519 - 603
Target Start/End: Original strand, 28802757 - 28802841
Alignment:
Q  519 tagcactgccataaccgctatttgacaacactttatattatatcatatatcgcggaatagtactggtttgttaaaattccgctat 603  Q
    |||| |||| ||| || ||||||||||||||||||||||| ||   ||||||||||| | || ||||||| ||||||||||||||    
T  28802757 tagcgctgctatagccactatttgacaacactttatattaaatagcatatcgcggaacaatagtggtttggtaaaattccgctat 28802841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 479 - 552
Target Start/End: Complemental strand, 36303208 - 36303135
Alignment:
Q  479 aaatagcggtttgttcaaattccactatgttacaatgttatagcactgccataaccgctatttgacaacacttt 552  Q
    ||||||||||||||||||||||| ||||  ||||  | ||||||||  ||||  | ||||||||||||||||||    
T  36303208 aaatagcggtttgttcaaattccgctatagtacagcgctatagcaccaccattccagctatttgacaacacttt 36303135  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 459 - 522
Target Start/End: Complemental strand, 26466155 - 26466092
Alignment:
Q  459 tgtcaatcgcagattgtgggaaatagcggtttgttcaaattccactatgttacaatgttatagc 522  Q
    ||||||||  ||||| ||| ||||| ||||||||||||||||||||||| ||||||| ||||||    
T  26466155 tgtcaatcatagattttggaaaataacggtttgttcaaattccactatgctacaatgatatagc 26466092  T

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Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 460 - 505
Target Start/End: Complemental strand, 25192140 - 25192095
Alignment:
Q  460 gtcaatcgcagattgtgggaaatagcggtttgttcaaattccacta 505  Q
    ||||||| ||||||||||||||||||||| | ||||||||||||||    
T  25192140 gtcaatcacagattgtgggaaatagcggtctattcaaattccacta 25192095  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 458 - 504
Target Start/End: Original strand, 48244389 - 48244435
Alignment:
Q  458 ttgtcaatcgcagattgtgggaaatagcggtttgttcaaattccact 504  Q
    |||||||| |||||| |||| || |||||||||||||||||||||||    
T  48244389 ttgtcaattgcagatagtggaaattagcggtttgttcaaattccact 48244435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 458 - 512
Target Start/End: Complemental strand, 10363504 - 10363450
Alignment:
Q  458 ttgtcaatcgcagattgtgggaaatagcggtttgttcaaattccactatgttaca 512  Q
    |||||||||||||||  ||| |||||||  ||||||||||||||||||| |||||    
T  10363504 ttgtcaatcgcagatcatggaaaatagcattttgttcaaattccactatattaca 10363450  T

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Target: scaffold0137 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 458 - 499
Target Start/End: Original strand, 36033 - 36074
Alignment:
Q  458 ttgtcaatcgcagattgtgggaaatagcggtttgttcaaatt 499  Q
    |||||||| ||||||||||| |||||||||||||||| ||||    
T  36033 ttgtcaattgcagattgtggaaaatagcggtttgttccaatt 36074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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