View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12964_low_10 (Length: 375)
Name: NF12964_low_10
Description: NF12964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12964_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 13 - 360
Target Start/End: Original strand, 4399996 - 4400343
Alignment:
| Q |
13 |
aatatataatcaatatttgatgttttagtttattttaggatcatccatttatggactctttatgttcaagttcaatagttgttactaattagtattaagt |
112 |
Q |
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| T |
4399996 |
aatatataatcaatatttgatgttttagtttattttaggatcatccatttatggactctttatgttcaagttcaatagttgttactaattagtattaagt |
4400095 |
T |
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| Q |
113 |
attataatgcatgtttcattttcattcttcttatataatcttcttcaaatcatcaaataataatattgatatatcttttattttaccaatcaagttatat |
212 |
Q |
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| T |
4400096 |
attataatgcatgtttcattttcattcttcttatataatcttcttcaaatcatcaaataataatattgatatatcttttattttaccaatcaagttatat |
4400195 |
T |
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| Q |
213 |
ggaggttaattttaatgtacaatcttttgttttaaacacttaaaattaatgtaaaatattttaaagatttgatgattataattgtcaataatactttata |
312 |
Q |
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| T |
4400196 |
ggaggttaattttaatgtacaatcttttgttttaaacacttaaaattaatgtaaaatattttaaagatttgatgattataattgtcaataatactttata |
4400295 |
T |
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| Q |
313 |
taatgagagcatgctaattagtaaatgtgattatcgatacgatgtatc |
360 |
Q |
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| T |
4400296 |
taatgagagcatgctaattagtaaatgtaattatcgatacgatgtatc |
4400343 |
T |
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