View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12964_low_13 (Length: 319)
Name: NF12964_low_13
Description: NF12964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12964_low_13 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 13 - 319
Target Start/End: Complemental strand, 21651678 - 21651369
Alignment:
| Q |
13 |
aatatgatggttgttagtactttgaagacaaatatgaaagggtgaaacatcgcatattaaaatatatagtacat---tataacctttttgacagcagcat |
109 |
Q |
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| T |
21651678 |
aatatgatggttgttagtactttgaagacaaatatgaaagggtgaaacatcgcatattcaaatatatagtacttctttataacctttttgacagcagcat |
21651579 |
T |
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| Q |
110 |
caatattttttctctgattatagccaacagtgaatgttactaaatactttggctttttcttcagatcctataaaattcaggatgtcatagttagtttaat |
209 |
Q |
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| T |
21651578 |
caatattttttctctgattatagccaacagtgaatgttaccaaatactttggctttttcttcagatcctataaaattcaggatgtcatagttagtttaat |
21651479 |
T |
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| Q |
210 |
cattaacaagatatcgataaattatctgcaacgcttgagagcaattgtatgtttcaaactcatcttacacgactttaattgcatagtaaacaactatcac |
309 |
Q |
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| T |
21651478 |
cattaacaagatatcgataaattatctgcaacgcttgagagcaattgtatgtttcaaactcatcttacacgactttaattgtatagtaaacaactatcac |
21651379 |
T |
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| Q |
310 |
cgatcatacc |
319 |
Q |
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| T |
21651378 |
cgatcatacc |
21651369 |
T |
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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 90 - 170
Target Start/End: Original strand, 40420315 - 40420395
Alignment:
| Q |
90 |
aacctttttgacagcagcatcaatattttttctctgattatagccaacagtgaatgttactaaatactttggctttttctt |
170 |
Q |
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| T |
40420315 |
aacctttttcactgcagcatcaatgttatgcctctgatcataaccaacagtgaatgtaagtaaatactttggctttttctt |
40420395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 164
Target Start/End: Complemental strand, 37461466 - 37461393
Alignment:
| Q |
91 |
acctttttgacagcagcatcaatattttttctctgattatagccaacagtgaatgttactaaatactttggctt |
164 |
Q |
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|||||||| ||||| ||||||||||| ||| |||| | ||| ||||||||||| || |||| ||||||||||| |
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| T |
37461466 |
acctttttcacagctgcatcaatattctttttctgctgatacccaacagtgaaggtcactaggtactttggctt |
37461393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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