View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12964_low_14 (Length: 309)

Name: NF12964_low_14
Description: NF12964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12964_low_14
NF12964_low_14
[»] chr8 (1 HSPs)
chr8 (19-309)||(904724-905014)


Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 19 - 309
Target Start/End: Original strand, 904724 - 905014
Alignment:
Q  19 cagctgggacatgaagattaaagagcattttcctagtgaatgactctatcttttggtccatacatttataatttttggaagtgaatatccatccataata 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  904724 cagctgggacatgaagattaaagagcattttcctagtgaatgactctatcttttggtccatacatttataatttttagaagtgaatatccatccataata 904823  T
Q  119 tatgaaccatagaaacaaaaatatatacgcaagagcttacgttacctattcaaatagaaatcagtgtaaccatcaagtatagaccaattattacgtcaat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  904824 tatgaaccatagaaacaaaaatatatacgcaagagcttacgttacctattcaaatagaaatcagtgtaaccatcaagtatagaccaattattatgtcaat 904923  T
Q  219 ctcattcctcaggaaagaaaaaaccaaaactcacttgttataaaaaccatctttaacaaattaaatactcatctcacaaattctctcttct 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  904924 ctcattcctcaggaaagaaaaaaccaaaactcacttgttataaaaaccatctttaacaaattaaatactcatctcacaaattctctcttct 905014  T

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