View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12964_low_15 (Length: 295)
Name: NF12964_low_15
Description: NF12964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12964_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 144; Significance: 9e-76; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 16 - 159
Target Start/End: Complemental strand, 10231357 - 10231214
Alignment:
| Q |
16 |
acatggttcccaaacccataataatattaacaactaaacaaccacccacaattcctatccctcaatttaacatagcattcgtcagaacccaagaaaaacc |
115 |
Q |
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| T |
10231357 |
acatggttcccaaacccataataatattaacaactaaacaaccacccacaattcctatccctcaatttaacatagcattcgtcagaacccaagaaaaacc |
10231258 |
T |
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| Q |
116 |
ccaaacatcacaacctcatgagacactaagaaccggttcccctg |
159 |
Q |
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| T |
10231257 |
ccaaacatcacaacctcatgagacactaagaaccggttcccctg |
10231214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 222 - 295
Target Start/End: Complemental strand, 10231151 - 10231078
Alignment:
| Q |
222 |
tcatcaatatcagcactaatactcaacacactcgatgacattatcaacatcttcatagacccaccaataaaacc |
295 |
Q |
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| T |
10231151 |
tcatcaatatcagcactaatactcaacacactcgatgacattatcaacaccttcatagacccaccaataaaacc |
10231078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 16 - 131
Target Start/End: Complemental strand, 10240140 - 10240025
Alignment:
| Q |
16 |
acatggttcccaaacccataataatattaacaactaaacaaccacccacaattcctatccctcaatttaacatagcattcgtcagaacccaagaaaaacc |
115 |
Q |
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| T |
10240140 |
acatggttcccaaacccatcatcataatagcatgtaaacaaccacccacaacttatatccctcaatttaacacagcatccgtcagaaccaaagaaaaacc |
10240041 |
T |
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| Q |
116 |
ccaaacatcacaacct |
131 |
Q |
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| T |
10240040 |
tcaaacatcacaacct |
10240025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 222 - 295
Target Start/End: Complemental strand, 10239931 - 10239858
Alignment:
| Q |
222 |
tcatcaatatcagcactaatactcaacacactcgatgacattatcaacatcttcatagacccaccaataaaacc |
295 |
Q |
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| T |
10239931 |
tcatcaatctcagcactaatactcaacacactcgatgacatcatcaacaccttcatagacccaccaataaaacc |
10239858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 232 - 295
Target Start/End: Original strand, 10254684 - 10254747
Alignment:
| Q |
232 |
cagcactaatactcaacacactcgatgacattatcaacatcttcatagacccaccaataaaacc |
295 |
Q |
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| T |
10254684 |
cagcactactattcaacacattcgacgacatcatcaacaccttcatagacccaccaataaaacc |
10254747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 128
Target Start/End: Original strand, 10254486 - 10254574
Alignment:
| Q |
43 |
taacaactaaacaaccacccacaa-ttc--ctatccctcaatttaacatagcattcgtcagaacccaagaaaaaccccaaacatcacaa |
128 |
Q |
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| T |
10254486 |
taacaagtaaacaaccaccaacaacttcttctatccctccattcaacatctcatccatcaaaaccaaagaaaaaccccaaacatcacaa |
10254574 |
T |
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