View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12964_low_16 (Length: 293)
Name: NF12964_low_16
Description: NF12964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12964_low_16 |
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| [»] chr7 (7 HSPs) |
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| [»] chr6 (2 HSPs) |
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| [»] chr5 (4 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 185 - 293
Target Start/End: Original strand, 44371069 - 44371178
Alignment:
| Q |
185 |
tggaggtaatcctattgatagtagtattactaaccagttcaaagacactatccagcagcgtggctttaatgatttgagctacatt-gggatattttcatc |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
44371069 |
tggaggtaatcctattgatagtagtattactaaccagttcaaagacactatccagcagcgtggctttaatgatttgagctacattggggatattttcatc |
44371168 |
T |
|
| Q |
284 |
acataaaagc |
293 |
Q |
| |
|
|||||||||| |
|
|
| T |
44371169 |
acataaaagc |
44371178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 185 - 293
Target Start/End: Original strand, 44379923 - 44380032
Alignment:
| Q |
185 |
tggaggtaatcctattgatagtagtattactaaccagttcaaagacactatccagcagcgtggctttaatgatttgagctacatt-gggatattttcatc |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
44379923 |
tggaggtaatcctattgatagtagtattactaaccagttcaaagacactatccagcagcgtggctttaatgatttgagctacattggggatattttcatc |
44380022 |
T |
|
| Q |
284 |
acataaaagc |
293 |
Q |
| |
|
|||||||||| |
|
|
| T |
44380023 |
acataaaagc |
44380032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 185 - 293
Target Start/End: Complemental strand, 23559496 - 23559387
Alignment:
| Q |
185 |
tggaggtaatcctattgatagtagtattactaaccagttcaaagacactatccagcagcgtggctttaatgatttgagctacatt-gggatattttcatc |
283 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
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| T |
23559496 |
tggaggtaatcctattgatagtagtattactaaccagttcaaagacactatccagcggcgtggctttaatgatttgagctacattggggatattttcatc |
23559397 |
T |
|
| Q |
284 |
acataaaagc |
293 |
Q |
| |
|
|||||||||| |
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|
| T |
23559396 |
acataaaagc |
23559387 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 23559918 - 23559825
Alignment:
| Q |
1 |
cttagcttgattctaattattatgcattgtttatttatttctctttgttttgtgttctcagacaatgtgcctttttcaattacttgcttgagtc |
94 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
23559918 |
cttagcttgattctaattattatgcattgtttatttatttctctttgttttgtgttcttagacaatgtgcctttttcaattacttgcttgagtc |
23559825 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 44370647 - 44370740
Alignment:
| Q |
1 |
cttagcttgattctaattattatgcattgtttatttatttctctttgttttgtgttctcagacaatgtgcctttttcaattacttgcttgagtc |
94 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
44370647 |
cttagcttgattctaattattatgcattgtttatttatttctctttgttttgtgttcttagacaatgtgcctttttcaattacttgcttgagtc |
44370740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 44379501 - 44379594
Alignment:
| Q |
1 |
cttagcttgattctaattattatgcattgtttatttatttctctttgttttgtgttctcagacaatgtgcctttttcaattacttgcttgagtc |
94 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
44379501 |
cttagcttgattctaattattatgcattgtttatttatttctctttgttttgtgttcttagacaatgtgcctttttcaattacttgcttgagtc |
44379594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 76
Target Start/End: Original strand, 32636104 - 32636171
Alignment:
| Q |
5 |
gcttgattctaattattatgcattgtttatttatttctctttgttttgtgttctcagacaatgtgccttttt |
76 |
Q |
| |
|
|||||||||||||||||||| |||||||| | || ||||||||||||||| ||||||||||| ||||| |
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|
| T |
32636104 |
gcttgattctaattattatggattgtttacta----ctatttgttttgtgttcttagacaatgtgctttttt |
32636171 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 185 - 293
Target Start/End: Original strand, 20714456 - 20714565
Alignment:
| Q |
185 |
tggaggtaatcctattgatagtagtattactaaccagttcaaagacactatccagcagcgtggctttaatgatttgagctacatt-gggatattttcatc |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
20714456 |
tggaggtaatcctattgatagtagtattactaaccagttcaaagacactatccagcagcgtggctttaatgatttgagctacattggggatattttcatc |
20714555 |
T |
|
| Q |
284 |
acataaaagc |
293 |
Q |
| |
|
|||||||||| |
|
|
| T |
20714556 |
acataaaagc |
20714565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 20714034 - 20714127
Alignment:
| Q |
1 |
cttagcttgattctaattattatgcattgtttatttatttctctttgttttgtgttctcagacaatgtgcctttttcaattacttgcttgagtc |
94 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
20714034 |
cttagcttgattctaattattatgcattgtttatttatttctctttgttttgtgttcttagacaatgtgcctttttcaattacttgcttgagtc |
20714127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 185 - 293
Target Start/End: Original strand, 27692592 - 27692701
Alignment:
| Q |
185 |
tggaggtaatcctattgatagtagtattactaaccagttcaaagacactatccagcagcgtggctttaatgatttgagctacatt-gggatattttcatc |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
27692592 |
tggaggtaatcctattgatagtagtattactaaccagttcaaagacactatccagcagcgtggctttaatgatttgagctacattggggatattttcatc |
27692691 |
T |
|
| Q |
284 |
acataaaagc |
293 |
Q |
| |
|
|||||||||| |
|
|
| T |
27692692 |
acataaaagc |
27692701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 185 - 293
Target Start/End: Original strand, 19907647 - 19907756
Alignment:
| Q |
185 |
tggaggtaatcctattgatagtagtattactaaccagttcaaagacactatccagcagcgtggctttaatgatttgagctacatt-gggatattttcatc |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
19907647 |
tggaggtaatcctattgatagtagtattactaaccagttcaaagacactatccagcagcgtggctttaatgatttgggctacattggggatattttcatc |
19907746 |
T |
|
| Q |
284 |
acataaaagc |
293 |
Q |
| |
|
|||||||||| |
|
|
| T |
19907747 |
acataaaagc |
19907756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 27692170 - 27692263
Alignment:
| Q |
1 |
cttagcttgattctaattattatgcattgtttatttatttctctttgttttgtgttctcagacaatgtgcctttttcaattacttgcttgagtc |
94 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
27692170 |
cttagcttgattctaattattatgcattgtttatttatttctctttgttttgtgttcttagacaatgtgcctttttcaattacttgcttgagtc |
27692263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 19907320 - 19907409
Alignment:
| Q |
1 |
cttagcttgattctaattattatgcattgtttatttatttctctttgttttgtgttctcagacaatgtgcctttttcaattacttgcttgagtc |
94 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
19907320 |
cttagcttgattctaattattatgcattgttta----tttctctttgttttgtgttcttagacaatgtgcctttttcaattacttgcttgagtc |
19907409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 185 - 293
Target Start/End: Original strand, 49227793 - 49227902
Alignment:
| Q |
185 |
tggaggtaatcctattgatagtagtattactaaccagttcaaagacactatccagcagcgtggctttaatgatttgagctacatt-gggatattttcatc |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
49227793 |
tggaggtaatcctattgatagtagtattactaaccagttcaaagacactatccagcagcgtggctttaatgatttgagctacattggggatattttcatc |
49227892 |
T |
|
| Q |
284 |
acataaaagc |
293 |
Q |
| |
|
|||||||||| |
|
|
| T |
49227893 |
acataaaagc |
49227902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 49227371 - 49227464
Alignment:
| Q |
1 |
cttagcttgattctaattattatgcattgtttatttatttctctttgttttgtgttctcagacaatgtgcctttttcaattacttgcttgagtc |
94 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
49227371 |
cttagcttgattctaattattatgcattgtttatttatttctctttgttttgtgttcttagacaatgtgcctttttcaattacttgcttgagtc |
49227464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 185 - 293
Target Start/End: Complemental strand, 48492345 - 48492236
Alignment:
| Q |
185 |
tggaggtaatcctattgatagtagtattactaaccagttcaaagacactatccagcagcgtggctttaatgatttgagctacatt-gggatattttcatc |
283 |
Q |
| |
|
||||||||||| | ||| ||||||||||| |||| |||||||||||||||||| ||| ||||||| | || |||| |||| ||| |||||||||||||| |
|
|
| T |
48492345 |
tggaggtaatcttgctgacagtagtattacaaaccggttcaaagacactatccaacagtgtggcttaactggtttgggctatattggggatattttcatc |
48492246 |
T |
|
| Q |
284 |
acataaaagc |
293 |
Q |
| |
|
|||||||||| |
|
|
| T |
48492245 |
acataaaagc |
48492236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 48492528 - 48492457
Alignment:
| Q |
1 |
cttagcttgattctaattattatgcattgtttatttatttctctttgttttgtgttctcagacaatgtgccttttt |
76 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| | |||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
48492528 |
cttagcttgattctaattattatggattgtttacta----ctctttgttttgtgttcttagacaatgtgctttttt |
48492457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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