View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12964_low_17 (Length: 275)
Name: NF12964_low_17
Description: NF12964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12964_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 8 - 258
Target Start/End: Complemental strand, 7132047 - 7131797
Alignment:
| Q |
8 |
aaattattctacctgctccaaaaggaagatattcaaaattattccctctaaaatcaatagtactaccttcaaatctctctggaataaacatctcagcatc |
107 |
Q |
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| T |
7132047 |
aaattcttctacctgctccaaaaggaagatattcaaaattattccctctaaaatcaatagaactaccttcaaatctctctggattaaacatctcagcatc |
7131948 |
T |
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| Q |
108 |
agtccaatattgaggatcccttgccatagcccatacattaatcatgactttagtcttttttggtatatcataaccatcaatgttggttaattcagtgcat |
207 |
Q |
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| T |
7131947 |
agtccaatattgaggatcccttgccatagcccatacattaatcatgactttagtcttttttggtatatcataaccatcaatgttggttaattcagtgcat |
7131848 |
T |
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| Q |
208 |
tctctagggagtaataaaggagtaggtgagtgtaaccttaaggtctctttt |
258 |
Q |
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| T |
7131847 |
tctctagggagtaataaaggagtaggtgagtgtaaccttaaggtctctttt |
7131797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 25 - 245
Target Start/End: Complemental strand, 7154524 - 7154304
Alignment:
| Q |
25 |
ccaaaaggaagatattcaaaattattccctctaaaatcaatagtactaccttcaaatctctctggaataaacatctcagcatcagtccaatattgaggat |
124 |
Q |
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| T |
7154524 |
ccaaaaggaatatactcaaaattatttcctttgaaatcaatcaaactaccatcaaacctctctggaatgaacatctcagcatcagtccaatattgtggat |
7154425 |
T |
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| Q |
125 |
cccttgccatagcccatacattaatcatgactttagtcttttttggtatatcataaccatcaatgttggttaattcagtgcattctctagggagtaataa |
224 |
Q |
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| T |
7154424 |
ctcttgccactgcccatgcatttatcatcactttagtattttttggtatttcataaccatctatgatggtcaattcagtgcattctctagggaccaataa |
7154325 |
T |
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| Q |
225 |
aggagtaggtgagtgtaacct |
245 |
Q |
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| T |
7154324 |
aggtgaaggtgggtgtaacct |
7154304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 76 - 205
Target Start/End: Complemental strand, 7141703 - 7141574
Alignment:
| Q |
76 |
tcaaatctctctggaataaacatctcagcatcagtccaatattgaggatcccttgccatagcccatacattaatcatgactttagtcttttttggtatat |
175 |
Q |
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||||| ||||||||||||||| ||||||||||| ||||||||| |||||| ||| | || ||||| |||| || | |||| |||| ||||||||||||| |
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| T |
7141703 |
tcaaacctctctggaataaacctctcagcatcattccaatatttaggatctcttcctattgcccacgcatttataaagactgtagtattttttggtatat |
7141604 |
T |
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| Q |
176 |
cataaccatcaatgttggttaattcagtgc |
205 |
Q |
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| T |
7141603 |
catacccatctattttggttagttctgtgc |
7141574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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