View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12964_low_22 (Length: 219)
Name: NF12964_low_22
Description: NF12964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12964_low_22 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 26 - 193
Target Start/End: Original strand, 10254652 - 10254819
Alignment:
| Q |
26 |
taacctcaaaaaacgacaaacatcgtcactcccagcactactattcaacacatttgacgacatcatcaacaccttcatagacccaccaataaaaccatcc |
125 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10254652 |
taacctcaaaaaaccacaaacatcgtcactcccagcactactattcaacacattcgacgacatcatcaacaccttcatagacccaccaataaaaccatcc |
10254751 |
T |
|
| Q |
126 |
gtagatccaagacatgttttgtcccaaaactttgcaccagtccttgacgaactccctccaacacaatg |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10254752 |
gtagatccaagacatgttttgtcccaaaactttgcaccagtccttgacgaactccctccaacacaatg |
10254819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 32 - 193
Target Start/End: Complemental strand, 10239947 - 10239786
Alignment:
| Q |
32 |
caaaaaacgacaaacatcgtcactcccagcactactattcaacacatttgacgacatcatcaacaccttcatagacccaccaataaaaccatccgtagat |
131 |
Q |
| |
|
||||| || ||||||||| ||| || |||||||| || |||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10239947 |
caaaacactacaaacatcatcaatctcagcactaatactcaacacactcgatgacatcatcaacaccttcatagacccaccaataaaaccatccgtagat |
10239848 |
T |
|
| Q |
132 |
ccaagacatgttttgtcccaaaactttgcaccagtccttgacgaactccctccaacacaatg |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10239847 |
ccaagacatgttttgtcccaaaactttgcaccagtccttgacgaactccctccaacacaatg |
10239786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 32 - 194
Target Start/End: Complemental strand, 10231167 - 10231005
Alignment:
| Q |
32 |
caaaaaacgacaaacatcgtcactcccagcactactattcaacacatttgacgacatcatcaacaccttcatagacccaccaataaaaccatccgtagat |
131 |
Q |
| |
|
||||| || ||||||||| ||| | |||||||| || |||||||| | || ||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10231167 |
caaaagactacaaacatcatcaatatcagcactaatactcaacacactcgatgacattatcaacaccttcatagacccaccaataaaaccatccgtagat |
10231068 |
T |
|
| Q |
132 |
ccaagacatgttttgtcccaaaactttgcaccagtccttgacgaactccctccaacacaatgt |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
10231067 |
ccaagacatgttttgtcccaaaactttgcaccagtcctagacgaactccctccaacacaatgt |
10231005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University