View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12964_low_5 (Length: 519)
Name: NF12964_low_5
Description: NF12964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12964_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 493; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 18 - 514
Target Start/End: Complemental strand, 46279235 - 46278739
Alignment:
| Q |
18 |
acttgcaccccttatcatcacctcctcctttttgtgtcagtcaggctcagaataaaatgcattatgcattgctgtgttatttctttgctttcctttttgg |
117 |
Q |
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| T |
46279235 |
acttgcaccccttatcatcacctcctcctttttgtgtcagtcaggctcagaataaaatgcattatgcattgctgtgttatttctttgctttcctttttgg |
46279136 |
T |
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| Q |
118 |
aatgttatgtggtgaggtatcttcagaattttggaaacaatatttcataaatattgttgtgtgtgtatgtcatctctatttaaagtgttgccactttctt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46279135 |
aatgttatgtggtgaggtatcttcagaattttggaaacaatatttcataaatattgttgtgtgtgtatgtcatctctatttaaagtgttgccactttctt |
46279036 |
T |
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| Q |
218 |
gtttgtttctgttctgagttctgaccttgaaattggtacaagtttacaatttatatatgtgtctcttgtaaggggtatttttaattgatgataaagaaaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46279035 |
gtttgtttctgttctgagttctgaccttgaaattggtacaagtttacaatttatatatgtgtctcttgtaaggggtatttttaattgatgataaagaaaa |
46278936 |
T |
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| Q |
318 |
ataactgattgatttttctccctatctggtgaatatatgcagtaattagttatatatcattacattttagttttgaaatggaattgaggtgtgttcaatt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
46278935 |
ataactgattgatttttctccctatctggtgaatatatgcagtaattagttatatatcattacattttagttttgaaatggagttgaggtgtgttcaatt |
46278836 |
T |
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| Q |
418 |
taatgctgctgctattgatgtcatatccatttacataacagtgttcctgatcctacctgacatatttccacatgctgtagttgttttttcttctctc |
514 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46278835 |
taatgctgctgctattgatgtcatatccatttacataacagtgttcctgatcctacctgacatatttccacatgctgtagttgttttttcttctctc |
46278739 |
T |
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