View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12964_low_6 (Length: 449)
Name: NF12964_low_6
Description: NF12964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12964_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 12 - 338
Target Start/End: Complemental strand, 10254539 - 10254216
Alignment:
| Q |
12 |
atgagatgttgaatggagggatagaagaagttgttggtggttgtttacttgttattatgatgggtttagggaccatggttatgttggaggaaataatgtt |
111 |
Q |
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| T |
10254539 |
atgagatgttgaatggagggatagaagaagttgttggtggttgtttacttgttattatgatgggtttagggaccatggttatgttggaggaaataatgtt |
10254440 |
T |
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| Q |
112 |
tgggggttgtagtgaaagaaagattggggaaattgtgatttgtgtgaggtgggagaggtacgatacttatcttgtgttggatggg---nnnnnnnnntca |
208 |
Q |
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| T |
10254439 |
tgggggttgtagtga----aagattggagaaattgtgatttgtgtgaggtgg--gaggtacgatacttatcttgtgttggatgggaaaaaaaaaaaatca |
10254346 |
T |
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| Q |
209 |
aatatgtgattgttaataggttgaaaatgaaatctaagttatttnnnnnnntgaagatattatgaattattttaggacacaaacaacacattagagtttt |
308 |
Q |
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| T |
10254345 |
aatatgtgattgttaataggttgaaaatgaaatttaagttatttaaaaaaatgaagatattatgaattattttaggacacaaacaacacattagagtttt |
10254246 |
T |
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| Q |
309 |
gaatctgaaatataagtatctaactttcat |
338 |
Q |
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| T |
10254245 |
gaatctgaaatataagtatctaactttcat |
10254216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 349 - 437
Target Start/End: Complemental strand, 10254172 - 10254084
Alignment:
| Q |
349 |
aataaatataagcaagagagtgagagagataatagaaaggaatttgagttccatattaatccaaaaatagattccttattgttttgatg |
437 |
Q |
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| T |
10254172 |
aataaatataagcaagagagtgaaagagataatagaaaggaatttgagttccatattaatccaaaaatagattccttattgttttgatg |
10254084 |
T |
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