View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12964_low_8 (Length: 435)
Name: NF12964_low_8
Description: NF12964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12964_low_8 |
 | |
|
| [»] scaffold0147 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0147 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 17 - 417
Target Start/End: Original strand, 13174 - 13574
Alignment:
| Q |
17 |
aatatcgagataaactggacttttaaggcgagaatagtagtgaagtgcttcttctatgtctagcacatgttcaagatcacctgattccatcatatccatt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13174 |
aatatcgagataaactggacttttaaggcgagaatagtagtgaagtgcttcttctatgtctagcacatgttcaagatcacctgattccatcatatccatt |
13273 |
T |
|
| Q |
117 |
ttcttcatcttctgtgctaacacatgtgctcccttattcgtgttttgtgaattcagatcctcctttttcctcagttgtgatcgtacgctaccttcataag |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
13274 |
ttcttcatcttctgtgctaacacatgtgctcccttattcgtgttttgtgaattcagatcctcctttttcctcagttgtgattgtacgctaccttcataag |
13373 |
T |
|
| Q |
217 |
cgcttttttgtggactttgtttcgaaaaacacacgaagtttccacttcttgcagcatcttccattgcaggctcttttcctttaccaaacatcttcattgt |
316 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13374 |
cgcttttttgtggacttcgtttcgaaaaacacacgaagtttccacttcttgcagcatcttccattgcaggctcttttcctttaccaaacatcttcattgt |
13473 |
T |
|
| Q |
317 |
gctgagatcagattgcaagatatcatagaactcattgtagaattggtcacttgagtaagcttttgcattgtccatattacaaaggaaattgaaggaaaga |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13474 |
gctgagatcagattgcaagatatcatagaactcattgtagaattggtcacttgagtaagcttttgcattgtccatattacaaaggaaattgaaggaaaga |
13573 |
T |
|
| Q |
417 |
g |
417 |
Q |
| |
|
| |
|
|
| T |
13574 |
g |
13574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 17 - 170
Target Start/End: Original strand, 7590 - 7743
Alignment:
| Q |
17 |
aatatcgagataaactggacttttaaggcgagaatagtagtgaagtgcttcttctatgtctagcacatgttcaagatcacctgattccatcatatccatt |
116 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| ||||||||||| | | |
|
|
| T |
7590 |
aatatctagataaaccggacttttaaggcgagaatagtagtgaagtgcttcttcgatgtctagtacgtgttcaagatcacctgaatccatcatatctaat |
7689 |
T |
|
| Q |
117 |
ttcttcatcttctgtgctaacacatgtgctcccttattcgtgttttgtgaattc |
170 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
7690 |
tccttcatcttctgtgctaacacatgtgctcccttattcatgttttgtgaattc |
7743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 45 - 128
Target Start/End: Complemental strand, 43879161 - 43879078
Alignment:
| Q |
45 |
cgagaatagtagtgaagtgcttcttctatgtctagcacatgttcaagatcacctgattccatcatatccattttcttcatcttc |
128 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||| || ||||||| ||||||||| || |||| |||| || |||||||||| |
|
|
| T |
43879161 |
cgagaataatagtgaagtgcttcttctatatctagtacttgttcaacatcacctgaatcattcatctccaattccttcatcttc |
43879078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University