View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12965_high_14 (Length: 444)
Name: NF12965_high_14
Description: NF12965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12965_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 27 - 439
Target Start/End: Original strand, 32802528 - 32802929
Alignment:
| Q |
27 |
ctttctcttccaaggcaattttcactctagcacaaaatggactagcccaaaagtccaaaacaaccacattgtctccctttgacatgttagcaatgattct |
126 |
Q |
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| T |
32802528 |
ctttctcttccaaagcaattttcactctagcacaaaatggactagcccaaaagtccaaaacaaccacattgtctccctttgacatgttagcaatgattct |
32802627 |
T |
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| Q |
127 |
ttggactcttgctcttttttctttgttgcttgtgatgacttgaaattgtgagagagttgttgaaatttataagaaagtttagtttagataaatnnnnnnn |
226 |
Q |
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| T |
32802628 |
ttggactat-----------ctttgttgcttgtgatgacttgaaattgtgtgagagttgttgaaatttataggaaagtttagtttagataaataaaaaaa |
32802716 |
T |
|
| Q |
227 |
ttagactacgatgtttactaggttttctttgtatgttccttcaaaaattgatgttagtacaatgttgtaagtgtccatatctatgttttggtttggacgt |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32802717 |
ttagactacgatgtttactaggttttctttgtatgttccttcaaaaattgatgttagtacaatgttgtaagtgtccatatctatgttttggtttggacgt |
32802816 |
T |
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| Q |
327 |
gggatgagaggagaatatgtgatggtatcaaatggccggccttaagctactatgttttttgtttcatttattggcgatgtatccaaactaggataatttg |
426 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32802817 |
gggatgagaggagaatatgtgatggtatcaaatggccggccttaagctactatgttttttgtttcatttattggcgatgtatccaaactaggataatttg |
32802916 |
T |
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| Q |
427 |
atcctttgctact |
439 |
Q |
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|||||||| |||| |
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| T |
32802917 |
atcctttggtact |
32802929 |
T |
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