View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12965_high_16 (Length: 391)
Name: NF12965_high_16
Description: NF12965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12965_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 166; Significance: 9e-89; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 7 - 184
Target Start/End: Complemental strand, 9745545 - 9745368
Alignment:
| Q |
7 |
ggacatcatcatatagctaattaaacaaaaacaattgttaccaaatgatccaatctctaatttctgattaatattggagggatcatatccctaatcttaa |
106 |
Q |
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| T |
9745545 |
ggacaacattatatagctaattaaacaaaaaaaattgttaccaaatgatccaatctctaatttctgattaatattggagggatcatatccctaatcttaa |
9745446 |
T |
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| Q |
107 |
tggaatctaaagatcggctgaataaaattatatgatgctagtatatgataaggttaatatttcttttcctaggaatgg |
184 |
Q |
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| T |
9745445 |
tggaatctaaagatcggctgaataaaattatatgatgctagtatatgataaggttaatatttcttttcctaggaatgg |
9745368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 257 - 376
Target Start/End: Complemental strand, 9745296 - 9745189
Alignment:
| Q |
257 |
atatctcttgagatggagcaaaggtcatttcatatcctaatcatnnnnnnntgaagcaatagttggcaattatagtggcaccctactaattaatgttcac |
356 |
Q |
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| T |
9745296 |
atatctcttgagatggagcaaaggtcatttcatatcctaatcataaaaaaatgaagcaatagt------------tggcaccctactaattaatgttcac |
9745209 |
T |
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| Q |
357 |
actattaattaaattccact |
376 |
Q |
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| T |
9745208 |
actattaattaaattccact |
9745189 |
T |
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