View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12965_high_23 (Length: 284)
Name: NF12965_high_23
Description: NF12965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12965_high_23 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 131; Significance: 5e-68; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 17 - 155
Target Start/End: Complemental strand, 1229260 - 1229122
Alignment:
| Q |
17 |
catatataaaacacaaattaatcatacctaaatatactgcatatccaatcgatttccattgccatcaccaacaaaaacaacataacaaaagattacatca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1229260 |
catatataaaacacaaattaatcatacctaaatatactgcatatccaatcgatttccattgccatcaccaacaaaaacaacataacaaaatattacatca |
1229161 |
T |
|
| Q |
117 |
aatcaaacaattaagtgaatgagatcagaacgataaaac |
155 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
1229160 |
aatcaaacaattaagtgaattagatcagaacgataaaac |
1229122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 208 - 273
Target Start/End: Complemental strand, 1229069 - 1229004
Alignment:
| Q |
208 |
caccttgtcttcctttcttgctttgtgattcattccagcaattcttatcccacaaatgagcttcat |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1229069 |
caccttgtcttcctttcttgctttgtgattcattccagcaattcttatcccacaaatgagcttcat |
1229004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 209 - 273
Target Start/End: Complemental strand, 54267122 - 54267058
Alignment:
| Q |
209 |
accttgtcttcctttcttgctttgtgattcattccagcaattcttatcccacaaatgagcttcat |
273 |
Q |
| |
|
||||||||| ||||||||| | || || |||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
54267122 |
accttgtctccctttcttgttctgagactcattccaacaattcttgtcccacaaatgagcttcat |
54267058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 209 - 273
Target Start/End: Complemental strand, 25049855 - 25049791
Alignment:
| Q |
209 |
accttgtcttcctttcttgctttgtgattcattccagcaattcttatcccacaaatgagcttcat |
273 |
Q |
| |
|
|||||||| |||||| ||| |||| ||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
25049855 |
accttgtcgtccttttttgttttgcgattcattccaacaattcttgtcccacaaatgagcttcat |
25049791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University