View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12965_high_26 (Length: 248)
Name: NF12965_high_26
Description: NF12965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12965_high_26 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 14 - 232
Target Start/End: Complemental strand, 7306979 - 7306752
Alignment:
| Q |
14 |
cctgtgacagaaatgcagcaagctgatgctgctatatgcgtattgacagaccgcggacagaaccaccg---------tatacctcagcgtcagcctcgca |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
7306979 |
cctgtgacagaaatgcagcaagctgatgctgctatatgcgtgttgacagaccgcggacagaaccaccgcaaccaccgtatacctcagcgtcagcctcgca |
7306880 |
T |
|
| Q |
105 |
atgcagaacagaagtgaaaaccattaacgcaacatacactcctttggtttccaatgccattcataatacatacaagcctgagaattggaacgatccaaat |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
7306879 |
atgcagaacagaagtgaaaaccattaacgcaacatacactcctttggattccaatgccattcataatacatacaagcctgagaattggaacgatccatat |
7306780 |
T |
|
| Q |
205 |
gccatctccaggacaatacctttatatc |
232 |
Q |
| |
|
||||||||||||||| |||||||||||| |
|
|
| T |
7306779 |
gccatctccaggacattacctttatatc |
7306752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 77 - 214
Target Start/End: Complemental strand, 26853256 - 26853120
Alignment:
| Q |
77 |
caccgtatacctcagcgtcagcctcgcaatgcagaacagaagtgaaaaccattaacgcaacatacactcctttggtttccaatgccattcataatacata |
176 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||| ||||||| ||| | || ||| ||||||| |||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
26853256 |
caccgtatacctcagcctcaacctcgcaatgca-aacagaaatgacaccctttaccgcaacagacactcctttgggttccaatgccattcatagaacata |
26853158 |
T |
|
| Q |
177 |
caagcctgagaattggaacgatccaaatgccatctcca |
214 |
Q |
| |
|
|||||| |||||||||| || ||||||||||||||||| |
|
|
| T |
26853157 |
caagccggagaattggaccggtccaaatgccatctcca |
26853120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 77 - 213
Target Start/End: Complemental strand, 10509449 - 10509314
Alignment:
| Q |
77 |
caccgtatacctcagcgtcagcctcgcaatgcagaacagaagtgaaaaccattaacgcaacatacactcctttggtttccaatgccattcataatacata |
176 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||| ||||||||||| ||| |||| ||||||| ||| |||||||| ||||||||||||||||| ||||| |
|
|
| T |
10509449 |
caccgtatacctcagcctcaacctcgcaatgca-aacagaagtgacaactattaccgcaacaaacagtcctttggattccaatgccattcatagaacata |
10509351 |
T |
|
| Q |
177 |
caagcctgagaattggaacgatccaaatgccatctcc |
213 |
Q |
| |
|
|||||| |||||||||| || ||||| |||||||||| |
|
|
| T |
10509350 |
caagccggagaattggaccggtccaactgccatctcc |
10509314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University