View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12965_high_5 (Length: 627)
Name: NF12965_high_5
Description: NF12965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12965_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 571; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 19 - 617
Target Start/End: Original strand, 14303952 - 14304550
Alignment:
| Q |
19 |
caaaactcccatgttaacagcaaaatagtacaagaatttcccaatccatccatgttcggcttcacgaaactgttgaatcttgttcccgaagtactcttcc |
118 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14303952 |
caaaactcccatgttcacagcaaaatagtacaagaatttcccaatccatccatgttcggcttcacgaaactgttgaatcttgttcccgaagtactcttcc |
14304051 |
T |
|
| Q |
119 |
catgcttgaaatttaatcacacgcatgttgttaagcaactcattcgtcgacttcattctcgaatcgcggctcatcattatccgaaactgaaaaacattac |
218 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14304052 |
cacgcttgaaatttaatcacacgcatgttgttaagcaactcattcgttgacttcattctcgaatcgcggctcatcattatccgaaactgaaaaacattac |
14304151 |
T |
|
| Q |
219 |
tattcttcgatcgatatgcagtgaagcaaaagacaatggcagtaccaagaattgctgcaacgacagatacaccaacatagctatacataagagccaatgc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14304152 |
tattcttcgatcgatatgcagtgaagcagaagacaatggcagtaccaagaattgctgcaacgacagatacaccaacatagctatacataagagccaatgc |
14304251 |
T |
|
| Q |
319 |
agcggcaacttgtaatggcatcatccaaataggatgaaactgcttcatcaaatctgagagttgttgagcatcaacagccatgtgattcacaatctgtcca |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14304252 |
agcggcaacttgtaatggcatcatccaaataggatgaaactgcttcatcaagtctgagagttgttgagcatcaacagccatgtgattcacaatctgtcca |
14304351 |
T |
|
| Q |
419 |
gttccatgagcttgtcttgaagaacttgacaaccttaaaccctttttgtaaaccgaagtgattatgctcgagcgaacaagcatacctagtttctgagaat |
518 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14304352 |
gttccatgagcctgtcttgaagaacttgacaaccttaaaccctttttgtaaaccgaagtgattatgctcgagcgaacaagcatacctagtttctgagaat |
14304451 |
T |
|
| Q |
519 |
ggaagttgaattgatgaacactaagtacttcaacagattttgccgcaaaaaggacacatatcaaaacaataccttcactagtcggactatctttctgtg |
617 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14304452 |
ggaagttgaattgatgaacactaagtacttcaacagattttgctgcaaaaaggacacatatcaaaacaataccttcactagtcggactatctttctgtg |
14304550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 25 - 613
Target Start/End: Original strand, 14282200 - 14282788
Alignment:
| Q |
25 |
tcccatgttaacagcaaaatagtacaagaatttcccaatccatccatgttcggcttcacgaaactgttgaatcttgttcccgaagtactcttcccatgct |
124 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
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|
| T |
14282200 |
tcccatgttaactgcaaaatagtacaagaatttcccaatccatccatgttcggcttcacgaaactgttgaatcttgttaccgaagtactcttcccacgct |
14282299 |
T |
|
| Q |
125 |
tgaaatttaatcacacgcatgttgttaagcaactcattcgtcgacttcattctcgaatcgcggctcatcattatccgaaactgaaaaacattactattct |
224 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| |||| ||||| |||||||| |||||| |||||||| ||||||||||| ||||||| ||| |
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|
| T |
14282300 |
tgaaacttaatcacacgcatgttgttaagcaactcatttgtcgccttcagcctcgaatcacggctcctcattatctgaaactgaaaactattactactct |
14282399 |
T |
|
| Q |
225 |
tcgatcgatatgcagtgaagcaaaagacaatggcagtaccaagaattgctgcaacgacagatacaccaacatagctatacataagagccaatgcagcggc |
324 |
Q |
| |
|
| | ||||||| ||| ||| || ||||||||||| |||||||||||| ||| |||||||| || |||||||||||||||| |||| ||||||||||| |
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|
| T |
14282400 |
ttgttcgatatagagtaaagaaagagacaatggcaataccaagaattgatgccacgacagacacgccaacatagctatacaaaagaaacaatgcagcgga |
14282499 |
T |
|
| Q |
325 |
aacttgtaatggcatcatccaaataggatgaaactgcttcatcaaatctgagagttgttgagcatcaacagccatgtgattcacaatctgtccagttcca |
424 |
Q |
| |
|
|||||| |||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14282500 |
aacttgcaatggcatcaaccatataggatgaaactgcatcatcaaatctgagagttgttgagcatcaacagccatgtgattcacaatctgtccagttcca |
14282599 |
T |
|
| Q |
425 |
tgagcttgtcttgaagaacttgacaaccttaaaccctttttgtaaaccgaagtgattatgctcgagcgaacaagcatacctagtttctgagaatggaagt |
524 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| ||||||| |
|
|
| T |
14282600 |
tgagcttgtcttgaagaacttgacaaccttaagccctttttgtaaactgaagtgattatgctcgaacgaacaagcataccaagtttctgagagtggaagt |
14282699 |
T |
|
| Q |
525 |
tgaattgatgaacactaagtacttcaacagattttgccgcaaaaaggacacatatcaaaacaataccttcactagtcggactatctttc |
613 |
Q |
| |
|
|||| |||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||| || ||||||| |
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|
| T |
14282700 |
tgaactgatgactactaagtacttcaagtgattttgccgcaaaaaggatcgatatcaaaacaataccttcactactcgtaccatctttc |
14282788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 19 - 613
Target Start/End: Original strand, 14320343 - 14320937
Alignment:
| Q |
19 |
caaaactcccatgttaacagcaaaatagtacaagaatttcccaatccatccatgttcggcttcacgaaactgttgaatcttgttcccgaagtactcttcc |
118 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||||| ||||||||||||| || ||||| |||||||||||||| ||||| || |||||||||||| |
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|
| T |
14320343 |
caaaactcctatgttaactgcaaaatagtacaagaatttcgcaatccatccatgctcagcttcgcgaaactgttgaattttgttaccaaagtactcttcc |
14320442 |
T |
|
| Q |
119 |
catgcttgaaatttaatcacacgcatgttgttaagcaactcattcgtcgacttcattctcgaatcgcggctcatcattatccgaaactgaaaaacattac |
218 |
Q |
| |
|
|| |||||||| ||||||||||||||||||||||| ||||| || |||| |||||| ||||||||||||||| |||||||| |||||| ||| ||||| |
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|
| T |
14320443 |
cacgcttgaaacttaatcacacgcatgttgttaagtaactcgtttgtcgccttcatcctcgaatcgcggctcgtcattatcttaaactggaaactattac |
14320542 |
T |
|
| Q |
219 |
tattcttcgatcgatatgcagtgaagcaaaagacaatggcagtaccaagaattgctgcaacgacagatacaccaacatagctatacataagagccaatgc |
318 |
Q |
| |
|
|| |||||| |||||| |||||| ||| || ||| ||| |||| | |||||||| || |||| |||||||||||| ||||||||||||||||| |
|
|
| T |
14320543 |
tactcttcgttcgatagagtgtgaagagaaacactatgctagttccaaacactgctgcaagtactgatagaccaacatagctgtacataagagccaatgc |
14320642 |
T |
|
| Q |
319 |
agcggcaacttgtaatggcatcatccaaataggatgaaactgcttcatcaaatctgagagttgttgagcatcaacagccatgtgattcacaatctgtcca |
418 |
Q |
| |
|
||| ||||||| |||||||||| ||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||| || ||| |
|
|
| T |
14320643 |
agcaccaacttgcaatggcatcaaccatataggatgaaactgcatcatcaaatctgagagctgttgagcatcaacagccatgtgattaacaatttggcca |
14320742 |
T |
|
| Q |
419 |
gttccatgagcttgtcttgaagaacttgacaaccttaaaccctttttgtaaaccgaagtgattatgctcgagcgaacaagcatacctagtttctgagaat |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||| ||||| ||||| | |
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|
| T |
14320743 |
gttccatgagcttgtcttgaagaacttgacaaccttaaaccctttttgtaaactgaagtgattatgctcgaacgaataagcataccgagtttttgagagt |
14320842 |
T |
|
| Q |
519 |
ggaagttgaattgatgaacactaagtacttcaacagattttgccgcaaaaaggacacatatcaaaacaataccttcactagtcggactatctttc |
613 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
14320843 |
ggaagttaaattgatgaacactaagtacttcaactgattttgctgcaaaaaggacacatatcaaaacaataccttcactagtcgtactatctttc |
14320937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 18 - 613
Target Start/End: Original strand, 25885024 - 25885619
Alignment:
| Q |
18 |
acaaaactcccatgttaacagcaaaatagtacaagaatttcccaatccatccatgttcggcttcacgaaactgttgaatcttgttcccgaagtactcttc |
117 |
Q |
| |
|
|||||||||| | |||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||| ||||||||| ||||| |||||||| |
|
|
| T |
25885024 |
acaaaactccaaagttaacagcaaaatagtacatgaatttcccaatccatccatgctcggattcacgaaactgtttaatcttgttaccgaaatactcttc |
25885123 |
T |
|
| Q |
118 |
ccatgcttgaaatttaatcacacgcatgttgttaagcaactcattcgtcgacttcattctcgaatcgcggctcatcattatccgaaactgaaaaacatta |
217 |
Q |
| |
|
||| |||||||| |||||||||||||||||||||||||||||||| |||| |||||| ||||||||||| || |||| ||| |||||||||| ||| |
|
|
| T |
25885124 |
ccaagcttgaaacttaatcacacgcatgttgttaagcaactcatttgtcgccttcatcctcgaatcgcgacttgtcatcatctgaaactgaaagttgtta |
25885223 |
T |
|
| Q |
218 |
ctattcttcgatcgatatgcagtgaagcaaaagacaatggcagtaccaagaattgctgcaacgacagatacaccaacatagctatacataagagccaatg |
317 |
Q |
| |
|
||| |||| | ||||||| | ||| ||| || ||| ||| ||||| | |||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
25885224 |
ctactcttggttcgatatagcgcgaaaagaaacactatgctagttccaagcaatgctgcaagtactgatacaccaacatagctatacataagagccaatg |
25885323 |
T |
|
| Q |
318 |
cagcggcaacttgtaatggcatcatccaaataggatgaaactgcttcatcaaatctgagagttgttgagcatcaacagccatgtgattcacaatctgtcc |
417 |
Q |
| |
|
| | || ||||| |||||||||| ||| ||||| |||| |||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
25885324 |
ccacagctacttgcaatggcatcaaccatatagggtgaagctgcatcatcatatctgagagttgttgagcatcaacagccatgtgattcactatctgtcc |
25885423 |
T |
|
| Q |
418 |
agttccatgagcttgtcttgaagaacttgacaaccttaaaccctttttgtaaaccgaagtgattatgctcgagcgaacaagcatacctagtttctgagaa |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||| |||| ||||||||| | |||||| || |
|
|
| T |
25885424 |
tgttccatgagcttgtcttgaagaacttgacaacctcagaccctttttgtaaaccgaagtaattatgctcgaacgaataagcataccgattttctgcgag |
25885523 |
T |
|
| Q |
518 |
tggaagttgaattgatgaacactaagtacttcaacagattttgccgcaaaaaggacacatatcaaaacaataccttcactagtcggactatctttc |
613 |
Q |
| |
|
||||||||| ||||||||||||| || |||||||| |||||||| |||||||||| ||||||||| ||||||||||||||| | |||||||||| |
|
|
| T |
25885524 |
tggaagttgtattgatgaacactcagcacttcaactgattttgctgcaaaaaggatcaatatcaaaataataccttcactagtagtactatctttc |
25885619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 326 - 613
Target Start/End: Original strand, 44349177 - 44349463
Alignment:
| Q |
326 |
acttgtaatggcatcatccaaataggatgaaactgcttcatcaaatctgagagttgttgagcatcaacagccatgtgattcacaatctgtccagttccat |
425 |
Q |
| |
|
||||| |||||||||| ||| ||||| |||| |||| |||||| |||||||||||||||||||||||||| |||||||||||| |||||||| ||||||| |
|
|
| T |
44349177 |
acttgcaatggcatcaaccatatagggtgaagctgcatcatcatatctgagagttgttgagcatcaacagacatgtgattcactatctgtcctgttccat |
44349276 |
T |
|
| Q |
426 |
gagcttgtcttgaagaacttgacaaccttaaaccctttttgtaaaccgaagtgattatgctcgagcgaacaagcatacctagtttctgagaatggaagtt |
525 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||| |||| ||||||||| | |||||| || |||||||| |
|
|
| T |
44349277 |
gagcttgtcttgaagaacttgacaatcttagaccctttttgtaaaccaaagtgattatgctcgaacgaataagcataccgattttctgcgagtggaagtt |
44349376 |
T |
|
| Q |
526 |
gaattgatgaacactaagtacttcaacagattttgccgcaaaaaggacacatatcaaaacaataccttcactagtcggactatctttc |
613 |
Q |
| |
|
| ||||||| ||||| ||||||||||| |||||||| |||||||||| ||||||||| |||| |||||||||| | |||||||||| |
|
|
| T |
44349377 |
gtattgatg-acactcagtacttcaactgattttgctgcaaaaaggatcaatatcaaaataatatcttcactagtagtactatctttc |
44349463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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