View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12965_high_9 (Length: 528)
Name: NF12965_high_9
Description: NF12965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12965_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 16 - 511
Target Start/End: Original strand, 34423417 - 34423913
Alignment:
| Q |
16 |
aatatgaaatgtaattttaagtgatgtaaattttggagctacatgggaacctataacctgtagttctcatttctgcattaaaaactattcatgcattcaa |
115 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34423417 |
aatatgaaatgtaattttaagtggtgtaaattttggagctacatgggaacctataacctgtagttctcatttctgcattaaaaactattcatgcattcaa |
34423516 |
T |
|
| Q |
116 |
atgagctctcagaacgttgctttgcttttgaatgatgatatcaacgactgttaatgatgaattgcttaataaatagtgctacaaagcttatatggcagag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
34423517 |
atgagctctcagaacgttgctttgcttttgaatgatgatatcaacgactgttaatgatgaattgcttaatgaatagtgctacaaagcttatatggcagag |
34423616 |
T |
|
| Q |
216 |
tctagggaaggttgaacccattgcaggtctattctgttgtacgatgagaaccttctgtggctaatgtatagtagtagcagtttatttgttaaagtgtaaa |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34423617 |
tctagggaaggttgaacccattgcaggtctattctgttgtatgatgagaaccttctgtggctaatgtatagtagtagcagtttatttgttaaagtgtaaa |
34423716 |
T |
|
| Q |
316 |
catggtaccctgcaatttgatt-aagcacctagaatcttttatcaatcaacaccctaggtgctggctgaggtttgatttgtttagtgtttacttgtctca |
414 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
34423717 |
catggtaccctgcaatttgattaaagcacctagaatcttttatcaatcaacaccctaggtgctggctgaggtttgatttgtttaatgtttacttgtctca |
34423816 |
T |
|
| Q |
415 |
tttagtacaaaagtaccaagtctaggacnnnnnnnggtgaaagaaaggggatcttaagtctaggatcatttagcatttctttcctcatatatgacat |
511 |
Q |
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|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34423817 |
tttagtacaaaagtactaagtctaggactttttttggtgaaagaaaggggatcttaagtctaggatcatttagcatttctttcctcatatatgacat |
34423913 |
T |
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