View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12965_low_1 (Length: 970)
Name: NF12965_low_1
Description: NF12965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12965_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 520; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 243 - 877
Target Start/End: Original strand, 22073576 - 22074211
Alignment:
| Q |
243 |
gtgggtgtacaacattggttcggtttaagcgtctggatatagatgaagattcggcatgacctgttaatggcacatgtaacttgttattttgaataattat |
342 |
Q |
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| T |
22073576 |
gtgggtgtacaacattggttcggtttaagcgtctggatatagatgaagattcagcatgacctgttaatggcacatctaacttgttattttgcaaaattct |
22073675 |
T |
|
| Q |
343 |
atttcttttttctctgcttagaaccgcgacctctggttggattctgcttccatcaaattgttttggattgggcagttgaggagaatgaacacaaactttt |
442 |
Q |
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| T |
22073676 |
ttttcttttttctctgcttagaactgcgacctctggttggattctgcttccattaaattgttttggattgggcagttgaggagaatgaacacaaactttt |
22073775 |
T |
|
| Q |
443 |
ttggatgcagcaagtgccttactttggtagagaattcttttcctgttttctcttcctgctgctgcattttcatgttgaagcactgtttcattcaaattaa |
542 |
Q |
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| T |
22073776 |
tttgatgcagcaagtgccttactttggtagagaattcttttcctgttttctcttcctgctgctgcattttcatgttgaagcactgtttcattaaaattaa |
22073875 |
T |
|
| Q |
543 |
taggtttaatgactttgagttttggtttgactttagaagttcgtgtgttaatatcagtagacacacatactttcttgccttctaacactaatttccttct |
642 |
Q |
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| T |
22073876 |
taggtttaatgactttgagttttggtttgactttagaaattggtgtgttaatgttagtagacacacatactttcttgccttctaacactaatttccttct |
22073975 |
T |
|
| Q |
643 |
ctct-ttgaagttgactgttgttcttgttgcctaagttgaagaggatccatgacatatgttagttttagaacttgtatttagttaataaaagtgatgaga |
741 |
Q |
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| T |
22073976 |
ctttcttgaagttgactgttgttctttttgcctaagttgaagaggatccatgacataggttagttttagaacttgtatttagttaataaaagtgatgaga |
22074075 |
T |
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| Q |
742 |
gagnnnnnnnnatgttgttctataaatgaagttaaccacgcttttggaagtgaaaaagatatagtttgacattttcccatgcatggtctcaattgtactc |
841 |
Q |
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||| ||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
22074076 |
gagttttttttatgtttttctataaatgaagttaaccacgcttttggaaggggaaaagatatagtttgacatttttccatgcatggtctcaattgtactc |
22074175 |
T |
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| Q |
842 |
tgctatcttattgaaaagagtaatagaaggaaagga |
877 |
Q |
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| T |
22074176 |
tgctatcttattgaaaagagtaatagaaggaaagga |
22074211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 23 - 177
Target Start/End: Original strand, 22073356 - 22073511
Alignment:
| Q |
23 |
gggttgagtccatttttcctgtgacatcgttcttttaacatgactctggttagggtagaacaaattttgacgatttgaaatatctgctaaaggagtggtg |
122 |
Q |
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| T |
22073356 |
gggttgagtccatttttcctgtgacacagttcttttaacatgagtctggttagggtagaacaaattttgacgatttgaaatatctgctaaaggagtggtg |
22073455 |
T |
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| Q |
123 |
tatgcattgg-nnnnnnnnatgtagtgggagtattatggatgtaatcagatggtga |
177 |
Q |
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| T |
22073456 |
tatgcattggttttttttgatgtagtgggagtattatggatggaatcagatggtga |
22073511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 872 - 959
Target Start/End: Original strand, 22076346 - 22076433
Alignment:
| Q |
872 |
aaaggacagttagcttttggtagagtggctaatgtaggagaaagtgggatttgacattactgttgaagcaggtaaattgatgatgatg |
959 |
Q |
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||||||| |||| ||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
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| T |
22076346 |
aaaggaccgttaatttttggtagaggggctaatgtaggagaaagtggaatttgacattactgttcaagcaggtaaattgatgatgatg |
22076433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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