View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12965_low_11 (Length: 520)
Name: NF12965_low_11
Description: NF12965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12965_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 158; Significance: 8e-84; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 9 - 283
Target Start/End: Original strand, 4833048 - 4833313
Alignment:
| Q |
9 |
gaaatgaataatctctgtcggagaactataggatacataaggtaagttctcccctttcaatttgaagcaaaaattgaacctctgactacatgtttaagag |
108 |
Q |
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| T |
4833048 |
gaaataaataatctctgtcagagaactatgggatatacaagatgagttctcccctttcaatttgaggcaaaaattgaacctctaaccacatgtttaagag |
4833147 |
T |
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| Q |
109 |
gcccaaatcttataccacttgaaacaatcaattgattgtataatgaaactttttatttctttataaacaataatccaaaatttttggtacttttcattct |
208 |
Q |
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| T |
4833148 |
gctcaaatcttataccacttgaaacaat-------ttgtataatgaaactttttatttctttataaacaatagtcctaaatttttggtacttttcattct |
4833240 |
T |
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| Q |
209 |
tatagttataattatagtgtgtgtcaactagagaccttttaaatagtctaaaggtgaacaaaatttatcatttac |
283 |
Q |
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| T |
4833241 |
--tagttataaaattatagtgtgtcagctagagacctttcaaatagtctaaaggtgaacaaaatttatcatttac |
4833313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 387 - 468
Target Start/End: Original strand, 4833460 - 4833539
Alignment:
| Q |
387 |
gagatacatacatatatatagtgtttgtttgttgcatcaaatttgtagaaatgaataaaataacaatttagtatctaaacta |
468 |
Q |
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| T |
4833460 |
gagatacatacatat--atagtgtttgtttgttgcatcaaatttgtagaaatgaataaaataacaatttagtatctaaacta |
4833539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 84 - 130
Target Start/End: Original strand, 2626628 - 2626674
Alignment:
| Q |
84 |
gaacctctgactacatgtttaagaggcccaaatcttataccacttga |
130 |
Q |
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| T |
2626628 |
gaacctctgatcacatgtttaagaggcccaaatctcttaccacttga |
2626674 |
T |
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