View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12965_low_13 (Length: 491)
Name: NF12965_low_13
Description: NF12965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12965_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 13 - 329
Target Start/End: Original strand, 7410153 - 7410469
Alignment:
| Q |
13 |
aaaagaaaatgtctcccaatttgtaattgtacactgaaatccagcataaaaggccactaatgctaccttaaaaagtgattctaccacttacctccttatc |
112 |
Q |
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| T |
7410153 |
aaaagaaaatgtctcccaatttgtaattctacactgaaatccagcataaaaggccactaatgctaccttaaaaagtgattccaccacttacctccttatc |
7410252 |
T |
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| Q |
113 |
tagatctctctcttcatatctctttacattttaattgtaaaataaaactatatatcggcgagttatgcatattaaaagctgtaaaaataggtactaataa |
212 |
Q |
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| T |
7410253 |
tagatctctctcttcttatctctttacattttaattgtaaaataaaactatatatcggcgagttatgcatattaaaagctgtaaaaataggtactaataa |
7410352 |
T |
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| Q |
213 |
ttgtttatgcagaagaaactaattacgtctctctcatttgcacaactcacatgcaatttctacagctataggtgcagtaaagtgtcctgtgactggcatt |
312 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
7410353 |
ttgtttatgcagaagaaactaattatgtctctctcatttgcacaactcacatgcaatttctacagctataggtgcagtaaagtgtcctgtgactggcttt |
7410452 |
T |
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| Q |
313 |
gtttattttaggaccac |
329 |
Q |
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||||||||||||||||| |
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| T |
7410453 |
gtttattttaggaccac |
7410469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 349 - 453
Target Start/End: Original strand, 7410497 - 7410601
Alignment:
| Q |
349 |
tgctgagcaggtaacaagcagaagagaaaacagcttggttggcatactacgggccatcacctatattcctttctattctttgcacaaaccctacctagcc |
448 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7410497 |
tgctgagcaggtaacaagcagaagagaaaacagcttggttggcatactacgggccatcacctatattcctttctattctttgcacaaaccctacctagcc |
7410596 |
T |
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| Q |
449 |
ctagt |
453 |
Q |
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||||| |
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| T |
7410597 |
ctagt |
7410601 |
T |
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