View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12965_low_14 (Length: 454)

Name: NF12965_low_14
Description: NF12965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12965_low_14
NF12965_low_14
[»] chr6 (4 HSPs)
chr6 (309-438)||(4743371-4743509)
chr6 (309-438)||(4182527-4182665)
chr6 (58-119)||(4182401-4182462)
chr6 (58-119)||(4743245-4743306)
[»] chr1 (5 HSPs)
chr1 (240-374)||(51855398-51855533)
chr1 (274-354)||(51838336-51838416)
chr1 (282-350)||(51832829-51832897)
chr1 (125-211)||(51855577-51855666)
chr1 (235-279)||(51756199-51756242)
[»] scaffold0710 (2 HSPs)
scaffold0710 (235-354)||(2201-2323)
scaffold0710 (125-211)||(2972-3061)
[»] chr8 (1 HSPs)
chr8 (127-204)||(13951694-13951770)


Alignment Details
Target: chr6 (Bit Score: 78; Significance: 4e-36; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 309 - 438
Target Start/End: Original strand, 4743371 - 4743509
Alignment:
Q  309 agaatctatggtggaagatttgaataattg-ctaactatataaaatgtagtgcacgatgacaaaactgcaactctaaccgata--------aaaagaaca 399  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||| |||        |||||||||    
T  4743371 agaatctatggtggaagatttgaataatttactaactatataaaatgtagtgcacgatgacaaaaccgcaactctaaccaataaataaattaaaagaaca 4743470  T
Q  400 ttgcaatatctcaagcggcatattccacatacgataatt 438  Q
    | |||||||||||||| ||||||||||||||| ||||||    
T  4743471 tagcaatatctcaagccgcatattccacataccataatt 4743509  T

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Target: chr6; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 309 - 438
Target Start/End: Original strand, 4182527 - 4182665
Alignment:
Q  309 agaatctatggtggaagatttgaataattg-ctaactatataaaatgtagtgcacgatgacaaaactgcaactctaaccgata--------aaaagaaca 399  Q
    |||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||| |||||||||||| |||        |||||||||    
T  4182527 agaatctatggtggaagatttgaataatttactaactatataaaatatagtgcacgatgacaaaaccgcaactctaacccataaataaattaaaagaaca 4182626  T
Q  400 ttgcaatatctcaagcggcatattccacatacgataatt 438  Q
    | |||||||||||||| ||||||||||||||| ||||||    
T  4182627 tagcaatatctcaagccgcatattccacataccataatt 4182665  T

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Target: chr6; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 58 - 119
Target Start/End: Original strand, 4182401 - 4182462
Alignment:
Q  58 aatgagacaactggtaaaactgcaaggtacaaaccattaccaagcaactaccagaaagggat 119  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  4182401 aatgagacaactgttaaaactgcaagatacaaaccattaccaagcaactaccagaaagggat 4182462  T

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Target: chr6; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 58 - 119
Target Start/End: Original strand, 4743245 - 4743306
Alignment:
Q  58 aatgagacaactggtaaaactgcaaggtacaaaccattaccaagcaactaccagaaagggat 119  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  4743245 aatgagacaactgttaaaactgcaagatacaaaccattaccaagcaactaccagaaagggat 4743306  T

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Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 240 - 374
Target Start/End: Complemental strand, 51855533 - 51855398
Alignment:
Q  240 atgcagaatccaaccaatcatatagaaaagcaaaattgaaaatagtagagtaa-acaataagagaaatttagaatctatggtggaagatttgaataattg 338  Q
    |||||||||||||||||| ||||||||||  ||||| || || | |||||| | | | ||||||||||||| ||||||  ||||||||||| ||| ||||    
T  51855533 atgcagaatccaaccaatgatatagaaaaagaaaatcgagaacattagagttatatattaagagaaatttataatctagagtggaagatttaaatgattg 51855434  T
Q  339 ctaactatataaaatgtagtgcacgatgacaaaact 374  Q
     ||||||||||||||||| |||||||||||||||||    
T  51855433 ttaactatataaaatgtaatgcacgatgacaaaact 51855398  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 274 - 354
Target Start/End: Complemental strand, 51838416 - 51838336
Alignment:
Q  274 attgaaaatagtagagtaaacaataagagaaatttagaatctatggtggaagatttgaataattgctaactatataaaatg 354  Q
    ||||| |||||||||||||| ||||| ||||||||| ||||||||| ||||||||||||| || |||||||||||||||||    
T  51838416 attgagaatagtagagtaaataataaaagaaatttataatctatggaggaagatttgaatgatagctaactatataaaatg 51838336  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 282 - 350
Target Start/End: Complemental strand, 51832897 - 51832829
Alignment:
Q  282 tagtagagtaaacaataagagaaatttagaatctatggtggaagatttgaataattgctaactatataa 350  Q
    ||||||||| || ||||||||||||||| ||||||||  ||||||||||||| |||| ||| |||||||    
T  51832897 tagtagagtcaataataagagaaatttataatctatgtaggaagatttgaatgattgttaattatataa 51832829  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 211
Target Start/End: Complemental strand, 51855666 - 51855577
Alignment:
Q  125 ataactgcaaggacttaatttttc-tcacgtcaacctttaaatattct--atctctatatgatattaaattaagcttgtttgaggtcaat 211  Q
    |||||||||||| ||||||||||  ||||||| ||||| ||||||| |  || ||||| ||||||| |||||||||||||||| ||||||    
T  51855666 ataactgcaaggtcttaattttttgtcacgtccaccttcaaatatttttcatatctatctgatattgaattaagcttgtttgaagtcaat 51855577  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 51756199 - 51756242
Alignment:
Q  235 gcagaatgcagaatccaaccaatcatatagaaaagcaaaattgaa 279  Q
    ||||||||||||||||||||||| || ||||||| ||||||||||    
T  51756199 gcagaatgcagaatccaaccaatgatgtagaaaa-caaaattgaa 51756242  T

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Target: scaffold0710 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: scaffold0710
Description:

Target: scaffold0710; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 235 - 354
Target Start/End: Original strand, 2201 - 2323
Alignment:
Q  235 gcagaatgcagaatccaaccaatcatatagaa--aagcaaaattgaaaatagtagagtaaacaataagagaaatttagaatctatggtggaagatttgaa 332  Q
    |||||| ||||||| ||||||||  |||||||  ||  ||||| || | ||||||||| || ||||||||||||||| ||||||||  ||||||||||||    
T  2201 gcagaaagcagaattcaaccaatgttatagaaggaaaaaaaatagagactagtagagtcaataataagagaaatttataatctatgtaggaagatttgaa 2300  T
Q  333 taatt-gctaactatataaaatg 354  Q
    | ||| |||||||||||||||||    
T  2301 tgattagctaactatataaaatg 2323  T

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Target: scaffold0710; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 211
Target Start/End: Complemental strand, 3061 - 2972
Alignment:
Q  125 ataactgcaaggacttaatttttc-tcacgtcaacctttaaatattct--atctctatatgatattaaattaagcttgtttgaggtcaat 211  Q
    |||||||||||| ||||||||||  ||||||| ||||| ||||||| |  || ||||| ||||||| |||||||||||||||| ||||||    
T  3061 ataactgcaaggtcttaattttttgtcacgtccaccttcaaatatttttcatatctatctgatattgaattaagcttgtttgaagtcaat 2972  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 127 - 204
Target Start/End: Original strand, 13951694 - 13951770
Alignment:
Q  127 aactgcaaggacttaatttttctcacgtcaacctttaaatattctatctctatatgatattaaattaagcttgtttga 204  Q
    ||||||||||||| || |||  |||| || |||||||||||||| |||||||| ||||||| |||| |||||||||||    
T  13951694 aactgcaaggactaaactttg-tcacatctacctttaaatattccatctctatttgatattgaatttagcttgtttga 13951770  T

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