View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12965_low_16 (Length: 398)
Name: NF12965_low_16
Description: NF12965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12965_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 16 - 388
Target Start/End: Complemental strand, 38037515 - 38037143
Alignment:
| Q |
16 |
cagtgaatgccaaactaaatctaaatcttgcttacatcgaagtcaagccctaaatgaacataaaagtgaaaaataacttgaacaaattggagacgtgatc |
115 |
Q |
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| T |
38037515 |
cagtgaatgccaaactaaatctaaatcttgcttacatcgaagtcaagccctaaatgaacataaaagtgaaaaataacttgaacaaattggagacgtgacc |
38037416 |
T |
|
| Q |
116 |
aaactcccatctcaatcatcaaaaaatattatattatttgagnnnnnnntcgtatcaaacaaatatacgtagatctaactctacaagtaagatcacctaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38037415 |
aaactcccatctcaatcatcaaaaaatattatattatttgagaaaaaaatcgtatcaaacaaatatacgtagatctaactctacaagtaagatcacctaa |
38037316 |
T |
|
| Q |
216 |
acctttttgagaattctaagtcgaagattgttggnnnnnnnggttaataatcaatgaatgatgaaattggagaaatatggaggaagagttgagattttta |
315 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
38037315 |
acctttttgagaattctaagtcgaagattgttggaaaaaaaggttaataatcaatgaatgatgaaattggagaaatatggaggaagagctgagattttta |
38037216 |
T |
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| Q |
316 |
tttggtttttgtttagatctatgcttgatagttgaatgtgaaattgtaatgaagatttaggttgttacctttg |
388 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38037215 |
tttggtttttgtttagatctatgcttgatagttgaatgtgaaattgtaatgaagatttaggttgttacctttg |
38037143 |
T |
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