View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12965_low_18 (Length: 382)
Name: NF12965_low_18
Description: NF12965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12965_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 347; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 14304571 - 14304941
Alignment:
| Q |
1 |
tgaatcagcaatggaccgacatacataacacaaagcctcatgaatgcaagaaagccagtgaaaactatgtgtttccaaaaacacctaaaaagggtaactc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14304571 |
tgaatcagcaatggaccgacatacataacacaaagcctcatgaatgcaagaaagccagtgaaaactatgtgtttccaaaaacacctaaaaagggtaactc |
14304670 |
T |
|
| Q |
101 |
caactggatgcttactgttttcctctggttttggccaattgttttgaaaaagttgagatattttttctgctctaaaatcaagaggaagtgaaggaacatc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
14304671 |
caactggatgcttactgttttcctctggtttcggccaattgttttgaaaaagttcagacattttttctgctctaaaatcaagaggaagtgaaggaacatc |
14304770 |
T |
|
| Q |
201 |
ttctagtttaaggggtgtttggtagcctttattgagtaaaggattcagccaaaaccaccctgttttggacaaaaatgaagaacaggcataaggactcaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
14304771 |
ttctagtttaaggggtgtttggtagcctttattgagtaaaggattcagccaaaaccaccctgttttggacaaaaatgaagaatgggcataaggactcaaa |
14304870 |
T |
|
| Q |
301 |
gttctatcgattgaaatcgatggatatgttgctactacatcggatattcttatcacatgaatacctgatga |
371 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
14304871 |
gttctatcgattgaaatcgatggatatgtggctactacatcggatattcttatcacatgaatacctgatga |
14304941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 14320962 - 14321332
Alignment:
| Q |
1 |
tgaatcagcaatggaccgacatacataacacaaagcctcatgaatgcaagaaagccagtgaaaactatgtgtttccaaaaacacctaaaaagggtaactc |
100 |
Q |
| |
|
||||||| ||| ||||| |||||||||||||||||||| |||| ||||| ||||| |||||| |||| ||||||||||||||||||||||||||||||| |
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|
| T |
14320962 |
tgaatcaacaagggaccaacatacataacacaaagcctaatgactgcaatgaagcccgtgaaagctatttgtttccaaaaacacctaaaaagggtaactc |
14321061 |
T |
|
| Q |
101 |
caactggatgcttactgttttcctctggttttggccaattgttttgaaaaagttgagatattttttctgctctaaaatcaagaggaagtgaaggaacatc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
14321062 |
caactggatgcttactgttttcctctggttttggccaattgctttgaaaaagttcagacattttttctgctctaaaatcaagaggaagtgaaggtacatc |
14321161 |
T |
|
| Q |
201 |
ttctagtttaaggggtgtttggtagcctttattgagtaaaggattcagccaaaaccaccctgttttggacaaaaatgaagaacaggcataaggactcaaa |
300 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||| |||| |||||||||||||||||| ||||||||||| ||||| ||||||||||||||| |
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|
| T |
14321162 |
ttctagtttaaggggtgttttgtaacctttattgagtaaagggttcatccaaaaccaccctgttttagacaaaaatgacgaacaagcataaggactcaaa |
14321261 |
T |
|
| Q |
301 |
gttctatcgattgaaatcgatggatatgttgctactacatcggatattcttatcacatgaatacctgatga |
371 |
Q |
| |
|
||||||||| | ||||| || |||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
14321262 |
gttctatcggtcgaaattgaccgatatgttgctactacatcggatattcttatcacgtgaatacctgatga |
14321332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 3 - 371
Target Start/End: Original strand, 14282815 - 14283183
Alignment:
| Q |
3 |
aatcagcaatggaccgacatacataacacaaagcctcatgaatgcaagaaagccagtgaaaactatgtgtttccaaaaacacctaaaaagggtaactcca |
102 |
Q |
| |
|
||||| ||| ||||| |||||||||||||||||| | |||| |||||| ||||| || ||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
14282815 |
aatcaacaagggaccaacatacataacacaaagcttaatgattgcaaggaagcccgtaaaagctatgtgtttccaaaaacacctaaaaagggtaactcca |
14282914 |
T |
|
| Q |
103 |
actggatgcttactgttttcctctggttttggccaattgttttgaaaaagttgagatattttttctgctctaaaatcaagaggaagtgaaggaacatctt |
202 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||| |||| ||||||| |
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|
| T |
14282915 |
actggatgcttactattttcctctggttttggccaattgttttgaaaaagttctgacattttttctgctctaaaatcgagaggaagtaaaggtacatctt |
14283014 |
T |
|
| Q |
203 |
ctagtttaaggggtgtttggtagcctttattgagtaaaggattcagccaaaaccaccctgttttggacaaaaatgaagaacaggcataaggactcaaagt |
302 |
Q |
| |
|
|||||||||||||||||||||| |||||||| || ||||| |||| |||| |||| ||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
14283015 |
ctagtttaaggggtgtttggtaacctttattaagcaaagggttcatccaataccaaactgttttggacaaaactgaagaacaggcataaggactcaaagt |
14283114 |
T |
|
| Q |
303 |
tctatcgattgaaatcgatggatatgttgctactacatcggatattcttatcacatgaatacctgatga |
371 |
Q |
| |
|
||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14283115 |
tctatcggtggaaactgatggatatgttgctactacatcggatattcttatcacatgaatacctgatga |
14283183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 25885644 - 25886014
Alignment:
| Q |
1 |
tgaatcagcaatggaccgacatacataacacaaagcctcatgaatgcaagaaagccagtgaaaactatgtgtttccaaaaacacctaaaaagggtaactc |
100 |
Q |
| |
|
||||||| || |||||| | |||||||||||||||||| || | |||||| |||||||||||| ||||||||||||||||||||||||| | || ||| |
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|
| T |
25885644 |
tgaatcaacagtggaccaatatacataacacaaagcctaatcattgcaaggaagccagtgaaagctatgtgtttccaaaaacacctaaataaggctacta |
25885743 |
T |
|
| Q |
101 |
caactggatgcttactgttttcctctggttttggccaattgttttgaaaaagttgagatattttttctgctctaaaatcaagaggaagtgaaggaacatc |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| |||| || || ||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
25885744 |
taactggatgcttactattttcctctggttttggccaattgtttataaaattttctgacattttttctgctctaaattcaagaggaagtgaaggaacatc |
25885843 |
T |
|
| Q |
201 |
ttctagtttaaggggtgtttggtagcctttattgagtaaaggattcagccaaaaccaccctgttttggacaaaaatgaagaacaggcataaggactcaaa |
300 |
Q |
| |
|
||||||||||||||| |||| ||| |||||||| | ||||| |||| ||||||||| |||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
25885844 |
ttctagtttaaggggagttttgtaacctttattaatcaaagggttcatccaaaaccaaactgttttggacaaaaatgaagaaccagcataaggactcaaa |
25885943 |
T |
|
| Q |
301 |
gttctatcgattgaaatcgatggatatgttgctactacatcggatattcttatcacatgaatacctgatga |
371 |
Q |
| |
|
||| ||| ||| || ||||| |||||| |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
25885944 |
tttccatcagttggaaccgatgtatatgtcgctactacatcggatattcttatcacatgaatccctgatga |
25886014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 44349488 - 44349858
Alignment:
| Q |
1 |
tgaatcagcaatggaccgacatacataacacaaagcctcatgaatgcaagaaagccagtgaaaactatgtgtttccaaaaacacctaaaaagggtaactc |
100 |
Q |
| |
|
||||||| || |||||| | |||||||||||||||||| || | |||||| |||||||||| | ||||||||||||||||||||||||| | || || |
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|
| T |
44349488 |
tgaatcaacagtggaccaatatacataacacaaagcctaatcactgcaaggaagccagtgatagctatgtgtttccaaaaacacctaaataaggctacca |
44349587 |
T |
|
| Q |
101 |
caactggatgcttactgttttcctctggttttggccaattgttttgaaaaagttgagatattttttctgctctaaaatcaagaggaagtgaaggaacatc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| || || ||||||||||||||||| ||||||||||||||||||| ||| |
|
|
| T |
44349588 |
taactggatgcttactgttttcctctggttttggccaattgtttataaaattttctgacattttttctgctctaaattcaagaggaagtgaaggaatatc |
44349687 |
T |
|
| Q |
201 |
ttctagtttaaggggtgtttggtagcctttattgagtaaaggattcagccaaaaccaccctgttttggacaaaaatgaagaacaggcataaggactcaaa |
300 |
Q |
| |
|
||||||||||||||| |||| ||| || ||||| | ||||| |||| ||||||||| |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
44349688 |
ttctagtttaaggggagttttgtaaccgttattaatcaaagggttcatccaaaaccaaactgttttggacaaaaatgaagaaccagcataaggactcaaa |
44349787 |
T |
|
| Q |
301 |
gttctatcgattgaaatcgatggatatgttgctactacatcggatattcttatcacatgaatacctgatga |
371 |
Q |
| |
|
||| ||| | | || |||| |||||| ||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
44349788 |
tttccatcagtcggaactgatgtatatgtcgctactacatcggatattcttatcacaagaatccctgatga |
44349858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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