View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12965_low_2 (Length: 688)

Name: NF12965_low_2
Description: NF12965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12965_low_2
NF12965_low_2
[»] chr1 (33 HSPs)
chr1 (300-562)||(36630118-36630382)
chr1 (575-669)||(47921562-47921656)
chr1 (568-669)||(30819574-30819675)
chr1 (571-669)||(30414163-30414261)
chr1 (573-669)||(2964923-2965019)
chr1 (575-669)||(14463321-14463415)
chr1 (570-669)||(1406706-1406805)
chr1 (587-669)||(24992926-24993008)
chr1 (572-661)||(44720064-44720153)
chr1 (574-669)||(1627736-1627830)
chr1 (570-669)||(7336119-7336218)
chr1 (574-669)||(25671038-25671133)
chr1 (572-669)||(17452957-17453054)
chr1 (573-666)||(25825362-25825455)
chr1 (584-669)||(42470767-42470852)
chr1 (592-669)||(43939513-43939590)
chr1 (575-667)||(5226801-5226893)
chr1 (574-669)||(1838722-1838817)
chr1 (575-667)||(9005430-9005518)
chr1 (570-669)||(17168152-17168251)
chr1 (583-662)||(40460991-40461070)
chr1 (607-667)||(10835582-10835642)
chr1 (598-669)||(15661140-15661211)
chr1 (574-669)||(26213760-26213855)
chr1 (570-641)||(49659888-49659959)
chr1 (599-657)||(36630382-36630440)
chr1 (584-664)||(30289030-30289110)
chr1 (614-667)||(8549625-8549678)
chr1 (609-666)||(10769833-10769890)
chr1 (572-611)||(1469752-1469791)
chr1 (574-640)||(4105513-4105579)
chr1 (250-299)||(36630017-36630066)
chr1 (572-625)||(38509725-38509778)
[»] chr3 (41 HSPs)
chr3 (576-669)||(39328415-39328508)
chr3 (571-669)||(6125768-6125866)
chr3 (571-669)||(36418711-36418809)
chr3 (571-669)||(54160386-54160484)
chr3 (571-667)||(9665307-9665403)
chr3 (571-667)||(50090896-50090992)
chr3 (570-669)||(34673532-34673631)
chr3 (573-667)||(37702636-37702730)
chr3 (572-669)||(3283336-3283433)
chr3 (570-669)||(21395925-21396024)
chr3 (572-669)||(54253859-54253956)
chr3 (571-665)||(13700318-13700412)
chr3 (573-667)||(54411858-54411952)
chr3 (571-667)||(42092805-42092901)
chr3 (574-669)||(45408247-45408342)
chr3 (583-669)||(8351062-8351148)
chr3 (572-669)||(19855463-19855560)
chr3 (592-669)||(34673408-34673485)
chr3 (592-669)||(34673470-34673547)
chr3 (572-667)||(5232683-5232778)
chr3 (584-667)||(20513097-20513180)
chr3 (570-669)||(35711892-35711991)
chr3 (570-669)||(39867134-39867233)
chr3 (599-669)||(41355439-41355509)
chr3 (574-669)||(8674537-8674632)
chr3 (597-663)||(11238690-11238756)
chr3 (573-662)||(35180573-35180662)
chr3 (593-669)||(36227811-36227887)
chr3 (597-669)||(52089066-52089138)
chr3 (617-669)||(53518933-53518985)
chr3 (574-669)||(52945571-52945665)
chr3 (596-662)||(4125996-4126062)
chr3 (574-620)||(27027333-27027379)
chr3 (591-669)||(38101253-38101331)
chr3 (628-669)||(27026701-27026742)
chr3 (629-669)||(19228619-19228659)
chr3 (630-669)||(27038047-27038086)
chr3 (574-620)||(46770495-46770541)
chr3 (583-667)||(27432054-27432139)
chr3 (598-667)||(35280433-35280502)
chr3 (633-669)||(4043935-4043971)
[»] chr8 (38 HSPs)
chr8 (573-669)||(38498311-38498407)
chr8 (574-665)||(16784331-16784422)
chr8 (571-669)||(14041328-14041426)
chr8 (583-669)||(39077344-39077430)
chr8 (574-667)||(5224300-5224393)
chr8 (572-669)||(10078303-10078400)
chr8 (570-669)||(12176267-12176366)
chr8 (570-669)||(12420695-12420794)
chr8 (572-669)||(26912383-26912480)
chr8 (573-669)||(9478711-9478807)
chr8 (572-665)||(30774124-30774217)
chr8 (574-669)||(44873913-44874008)
chr8 (571-669)||(33568129-33568227)
chr8 (570-669)||(12295227-12295326)
chr8 (570-669)||(23472511-23472609)
chr8 (572-669)||(9479413-9479510)
chr8 (574-667)||(16930867-16930960)
chr8 (574-667)||(40067615-40067708)
chr8 (574-669)||(1983539-1983634)
chr8 (599-669)||(254011-254081)
chr8 (599-669)||(661777-661847)
chr8 (574-669)||(1271083-1271182)
chr8 (575-669)||(13326991-13327084)
chr8 (571-669)||(28539161-28539259)
chr8 (583-669)||(31272835-31272921)
chr8 (574-669)||(42806210-42806307)
chr8 (584-644)||(10775933-10775993)
chr8 (599-658)||(847575-847634)
chr8 (594-669)||(41829580-41829655)
chr8 (575-669)||(22812383-22812476)
chr8 (585-662)||(28969168-28969244)
chr8 (570-611)||(39589995-39590036)
chr8 (574-659)||(44473748-44473833)
chr8 (576-620)||(14371614-14371658)
chr8 (629-669)||(19922566-19922606)
chr8 (570-665)||(14916727-14916822)
chr8 (572-611)||(16645537-16645576)
chr8 (574-611)||(3210924-3210961)
[»] chr4 (35 HSPs)
chr4 (570-669)||(6137256-6137355)
chr4 (574-669)||(38427133-38427228)
chr4 (571-668)||(43837755-43837852)
chr4 (573-669)||(51682623-51682719)
chr4 (571-669)||(34728284-34728382)
chr4 (583-669)||(47960359-47960445)
chr4 (574-669)||(19329360-19329455)
chr4 (571-669)||(42434293-42434391)
chr4 (573-669)||(32090027-32090123)
chr4 (570-669)||(13386980-13387079)
chr4 (575-669)||(5975657-5975751)
chr4 (573-666)||(13387863-13387955)
chr4 (572-669)||(20835705-20835802)
chr4 (570-669)||(20503429-20503528)
chr4 (570-669)||(51702453-51702552)
chr4 (576-667)||(52719062-52719153)
chr4 (584-669)||(11020412-11020497)
chr4 (584-669)||(32626126-32626211)
chr4 (572-651)||(22254221-22254300)
chr4 (574-669)||(33117514-33117609)
chr4 (573-669)||(48860790-48860883)
chr4 (574-669)||(34041256-34041351)
chr4 (584-667)||(40479857-40479940)
chr4 (595-665)||(16467225-16467295)
chr4 (570-620)||(54158113-54158163)
chr4 (602-667)||(32868013-32868078)
chr4 (597-669)||(13372395-13372467)
chr4 (597-669)||(13382596-13382668)
chr4 (629-669)||(27907045-27907085)
chr4 (574-669)||(52344494-52344589)
chr4 (595-669)||(6944624-6944698)
chr4 (592-669)||(28755403-28755483)
chr4 (575-644)||(38963331-38963400)
chr4 (630-669)||(40875268-40875307)
chr4 (573-603)||(7645950-7645980)
[»] chr7 (28 HSPs)
chr7 (571-669)||(42373518-42373616)
chr7 (572-665)||(43077557-43077650)
chr7 (572-669)||(27130995-27131092)
chr7 (572-669)||(45099969-45100066)
chr7 (570-669)||(48227291-48227390)
chr7 (571-669)||(3203351-3203449)
chr7 (575-669)||(21993471-21993565)
chr7 (570-667)||(38368156-38368253)
chr7 (583-669)||(12362892-12362978)
chr7 (572-669)||(5995113-5995210)
chr7 (574-669)||(24251831-24251924)
chr7 (571-667)||(31953156-31953252)
chr7 (573-669)||(41378431-41378527)
chr7 (572-656)||(3875107-3875189)
chr7 (575-667)||(3961178-3961270)
chr7 (574-669)||(27946883-27946978)
chr7 (574-669)||(35221725-35221825)
chr7 (573-665)||(35983106-35983198)
chr7 (573-665)||(36004518-36004610)
chr7 (572-669)||(46003792-46003890)
chr7 (587-669)||(20568271-20568354)
chr7 (583-669)||(41037134-41037220)
chr7 (607-669)||(41585939-41586001)
chr7 (608-669)||(48709095-48709156)
chr7 (570-618)||(32392287-32392335)
chr7 (592-659)||(36343021-36343088)
chr7 (595-669)||(24611437-24611511)
chr7 (570-611)||(48625002-48625043)
[»] chr2 (23 HSPs)
chr2 (574-668)||(18924598-18924692)
chr2 (572-669)||(33740233-33740330)
chr2 (573-669)||(39089161-39089257)
chr2 (573-669)||(1749976-1750072)
chr2 (573-669)||(29471692-29471788)
chr2 (574-669)||(39434989-39435084)
chr2 (574-669)||(42090415-42090510)
chr2 (572-669)||(9548268-9548365)
chr2 (572-669)||(16719785-16719882)
chr2 (574-669)||(4206430-4206528)
chr2 (574-669)||(12725775-12725870)
chr2 (574-669)||(39961596-39961691)
chr2 (583-669)||(2969706-2969792)
chr2 (575-669)||(10664749-10664843)
chr2 (572-669)||(24314213-24314310)
chr2 (583-667)||(44539903-44539988)
chr2 (573-653)||(25810479-25810559)
chr2 (584-669)||(21950650-21950735)
chr2 (573-667)||(25880575-25880673)
chr2 (629-669)||(12895384-12895424)
chr2 (572-611)||(10862575-10862614)
chr2 (572-605)||(27097032-27097065)
chr2 (570-669)||(34125606-34125702)
[»] chr5 (24 HSPs)
chr5 (572-669)||(23204375-23204472)
chr5 (572-669)||(16273628-16273725)
chr5 (573-669)||(19323763-19323859)
chr5 (571-669)||(16994202-16994300)
chr5 (575-669)||(20269235-20269329)
chr5 (583-669)||(31042586-31042672)
chr5 (572-669)||(37172455-37172552)
chr5 (571-667)||(9741723-9741819)
chr5 (571-669)||(13960441-13960538)
chr5 (572-669)||(28038267-28038364)
chr5 (572-669)||(31056435-31056532)
chr5 (572-667)||(18015642-18015736)
chr5 (574-669)||(27365716-27365811)
chr5 (570-642)||(21913836-21913908)
chr5 (573-669)||(38758684-38758779)
chr5 (629-669)||(26730367-26730407)
chr5 (595-669)||(38293541-38293616)
chr5 (569-625)||(33429249-33429305)
chr5 (570-669)||(17689402-17689500)
chr5 (572-619)||(19863159-19863206)
chr5 (607-669)||(19325101-19325163)
chr5 (570-620)||(23129647-23129697)
chr5 (573-669)||(28813121-28813218)
chr5 (585-669)||(15978814-15978898)
[»] chr6 (12 HSPs)
chr6 (570-669)||(9891369-9891468)
chr6 (575-669)||(10074994-10075088)
chr6 (583-669)||(12159509-12159595)
chr6 (572-669)||(6322488-6322585)
chr6 (576-669)||(17347107-17347200)
chr6 (573-665)||(18096330-18096422)
chr6 (573-665)||(18102450-18102542)
chr6 (591-669)||(15081138-15081216)
chr6 (585-669)||(9533376-9533464)
chr6 (629-667)||(19104343-19104381)
chr6 (574-652)||(30416461-30416539)
chr6 (630-667)||(7190660-7190697)
[»] scaffold0006 (1 HSPs)
scaffold0006 (573-669)||(231190-231286)
[»] scaffold0002 (2 HSPs)
scaffold0002 (583-669)||(478319-478405)
scaffold0002 (630-669)||(94870-94909)
[»] scaffold0001 (1 HSPs)
scaffold0001 (570-669)||(392402-392501)
[»] scaffold0168 (1 HSPs)
scaffold0168 (571-669)||(35051-35149)
[»] scaffold0003 (1 HSPs)
scaffold0003 (577-667)||(103309-103399)
[»] scaffold0093 (1 HSPs)
scaffold0093 (577-669)||(9155-9246)
[»] scaffold0004 (1 HSPs)
scaffold0004 (574-662)||(121701-121789)
[»] scaffold0246 (1 HSPs)
scaffold0246 (584-667)||(17796-17879)
[»] scaffold0007 (1 HSPs)
scaffold0007 (576-652)||(77027-77103)
[»] scaffold0091 (1 HSPs)
scaffold0091 (629-667)||(3773-3811)


Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 300 - 562
Target Start/End: Original strand, 36630118 - 36630382
Alignment:
Q  300 tacaattaagtggagtggacatgttgtttttctaacttagtattatactactacactcattttgtcacttccatagtcatttcatttcaagtttttaatt 399  Q
    ||||||||||| ||||||||| |||| |||| ||| | ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36630118 tacaattaagtagagtggacacgttgattttttaattgagtgttacactactacactcattttgtcacttccatagtcatttcatttcaagtttttaatt 36630217  T
Q  400 tcactagtttattggccacta--atgacaagtcccttcagaaaacaaattttcattttcataacataagtctcttccttattgagtgctacactactgct 497  Q
    |||||||||||||| ||||||  |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||  || |||||||||||||    
T  36630218 tcactagtttattgaccactataatgacaagtcccttcaaaaaacaaattttcattttcataacacaagtctcttccttattctgtactacactactgct 36630317  T
Q  498 tacaaccatattcaaaattatattgttgctgtcctgtaataaaattttagcgatttgttgactaa 562  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||    
T  36630318 tacaaccatattcaaaattatattgttgctgtcctgtaataaaattttggcgacttgttgactaa 36630382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 575 - 669
Target Start/End: Original strand, 47921562 - 47921656
Alignment:
Q  575 ttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||    
T  47921562 ttttgctagaagacgccttttatgaaggtgttttttaacaagttatcctattgacatttgttaaaagataccaattaatttttatgaaggtgtct 47921656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 568 - 669
Target Start/End: Complemental strand, 30819675 - 30819574
Alignment:
Q  568 tttagggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgt 667  Q
    |||||| ||||||| ||||||||||||||||||||||| ||||| ||| ||||||||| | |||||| ||||||||| ||||||||||||||||||||||    
T  30819675 tttaggattttgctagaagacaccttttatgaaggtgttttttagcaaattatcctataggcatttgctaaaagacaccaactaatttttatgaaggtgt 30819576  T
Q  668 ct 669  Q
    ||    
T  30819575 ct 30819574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 571 - 669
Target Start/End: Complemental strand, 30414261 - 30414163
Alignment:
Q  571 agggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||||||| ||| ||||||||||||||||||| ||||| ||||||||  ||||  |||||||||||||||| ||||||||||||||||||||||||    
T  30414261 agggttttgctagaatacaccttttatgaaggtgttttttagcaagttattatattagcatttgttaaaagacaccaactaatttttatgaaggtgtct 30414163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 573 - 669
Target Start/End: Complemental strand, 2965019 - 2964923
Alignment:
Q  573 ggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||||| ||||||||| ||||||||||||| || || |||||||| ||||  ||||||| ||||||||| ||||||||||||||||||||||||    
T  2965019 ggttttgctagaagacaccgtttatgaaggtgtcttctagcaagttattctatgaacatttgctaaaagacaccaactaatttttatgaaggtgtct 2964923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 575 - 669
Target Start/End: Original strand, 14463321 - 14463415
Alignment:
Q  575 ttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||| ||||||||||||||||||||||| ||||| |||||||| ||||   |||||| |||||||||  |||||||||||||||||||||||    
T  14463321 ttttgctagaagacaccttttatgaaggtgttttttagcaagttattctatgagcatttgctaaaagacactaactaatttttatgaaggtgtct 14463415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 570 - 669
Target Start/End: Original strand, 1406706 - 1406805
Alignment:
Q  570 tagggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||||||| |||||||| |||||||||||||| ||||| ||| |||| ||||  ||||||| ||||||||| | |||||||||| |||||||||||    
T  1406706 tagggttttgctagaagacacattttatgaaggtgtcttttagcaaattattctatgaacatttggtaaaagacaccgactaatttttgtgaaggtgtct 1406805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 587 - 669
Target Start/End: Complemental strand, 24993008 - 24992926
Alignment:
Q  587 acaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||||||||||||||| ||||| ||| ||||  ||||  |||||||||||||||| ||||||||||||||||||||||||    
T  24993008 acaccttttatgaaggtgtcttttagcaaattattatattagcatttgttaaaagacaccaactaatttttatgaaggtgtct 24992926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 572 - 661
Target Start/End: Original strand, 44720064 - 44720153
Alignment:
Q  572 gggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatga 661  Q
    |||||||| | ||||||||||||||||||||||| ||||| |||||||| |||||  || ||| ||||||||| ||||||||||||||||    
T  44720064 gggttttgttagaagacaccttttatgaaggtgtcttttagcaagttattctattagcaattggtaaaagacatcaactaatttttatga 44720153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 574 - 669
Target Start/End: Complemental strand, 1627830 - 1627736
Alignment:
Q  574 gttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||| ||||||||||||||| ||| ||| ||||| |||||||| ||||  ||||||| ||||||||| ||||||| ||||||||||||||||    
T  1627830 gttttgctagaagacaccttttataaagatgtcttttagcaagttattctatgaacatttgctaaaagaca-caactaacttttatgaaggtgtct 1627736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 570 - 669
Target Start/End: Complemental strand, 7336218 - 7336119
Alignment:
Q  570 tagggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||||||| |||||||| |||||| ||||||| ||||| ||| |||  ||||   |||||||||||||||| ||| ||||||||||||||||||||    
T  7336218 tagggttttgctagaagacacattttattaaggtgtcttttagcaaattactctataagcatttgttaaaagacaccaattaatttttatgaaggtgtct 7336119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 574 - 669
Target Start/End: Complemental strand, 25671133 - 25671038
Alignment:
Q  574 gttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||||  ||||||  |||||||||||||| ||||| |||||||| ||||   |||||| ||||||||| ||||||||||||||||||||||||    
T  25671133 gttttgctaaaagacatattttatgaaggtgtcttttagcaagttattctatgagcatttgctaaaagacaccaactaatttttatgaaggtgtct 25671038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 572 - 669
Target Start/End: Complemental strand, 17453054 - 17452957
Alignment:
Q  572 gggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||| || |||||||| |||||||||||||| ||||| |||| ||| ||||   |||||| ||||||||| |||||||||||| |||||||||||    
T  17453054 gggttttactcgaagacactttttatgaaggtgtcttttagcaagctattctatgagcatttgctaaaagacaccaactaatttttgtgaaggtgtct 17452957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 573 - 666
Target Start/End: Complemental strand, 25825455 - 25825362
Alignment:
Q  573 ggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtg 666  Q
    ||||||| | ||||||||||||||||||||||| ||||| ||||||||  |||   ||||||||||||||||  |||||||||||||| |||||    
T  25825455 ggttttgttagaagacaccttttatgaaggtgtcttttagcaagttattttatgagcatttgttaaaagacacaaactaatttttatggaggtg 25825362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 584 - 669
Target Start/End: Original strand, 42470767 - 42470852
Alignment:
Q  584 aagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||| |||||||||| |||  ||||||||||||| ||||   |||||| ||||||||| ||||||||||||||||||||||||    
T  42470767 aagacacattttatgaagatgtgctttaacaagttattctatgagcatttgctaaaagacaccaactaatttttatgaaggtgtct 42470852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 592 - 669
Target Start/End: Complemental strand, 43939590 - 43939513
Alignment:
Q  592 ttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||||||||| ||||| |||||||| ||||   |||||||||||||||| ||| ||||||||||||||||||||    
T  43939590 ttttatgaaggtgtcttttagcaagttattctatgagcatttgttaaaagacaccaattaatttttatgaaggtgtct 43939513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 575 - 667
Target Start/End: Original strand, 5226801 - 5226893
Alignment:
Q  575 ttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgt 667  Q
    |||||||  ||||||| |||||||||||||| ||||||||||||||  |||    ||||||||||| ||| ||||||||||||||||||||||    
T  5226801 ttttgctaaaagacacattttatgaaggtgtcttttaacaagttattatatgagtatttgttaaaaaacaccaactaatttttatgaaggtgt 5226893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 574 - 669
Target Start/End: Complemental strand, 1838817 - 1838722
Alignment:
Q  574 gttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||| | |||||||| ||||||||| |||| |||||  ||||||| ||||   |||||| ||||||||| ||||||||||||||||||||||||    
T  1838817 gttttgttagaagacacattttatgaaagtgtcttttagtaagttattctatgagcatttgctaaaagacaccaactaatttttatgaaggtgtct 1838722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 575 - 667
Target Start/End: Original strand, 9005430 - 9005518
Alignment:
Q  575 ttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgt 667  Q
    ||||||| ||||||||||||||||||||||| ||||| |||||||| ||||   |||||||||||||||    |||||||| |||||||||||    
T  9005430 ttttgctagaagacaccttttatgaaggtgtcttttagcaagttattctatcagcatttgttaaaagac----actaatttctatgaaggtgt 9005518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 570 - 669
Target Start/End: Original strand, 17168152 - 17168251
Alignment:
Q  570 tagggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||| ||||||| |||||||||  |||||||||||| |||||||||||||| ||||   |||||| |||||||||  |  ||||||||||||||||||||    
T  17168152 taggattttgctagaagacaccaattatgaaggtgtcttttaacaagttattctatatgcatttgctaaaagacactagttaatttttatgaaggtgtct 17168251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 583 - 662
Target Start/End: Original strand, 40460991 - 40461070
Alignment:
Q  583 gaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaa 662  Q
    |||||||| |||||||||||||| ||||| ||||||||  |||  ||||||||||||||||| ||| |||||||||||||    
T  40460991 gaagacactttttatgaaggtgtcttttagcaagttattatatgaacatttgttaaaagacaccaagtaatttttatgaa 40461070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 607 - 667
Target Start/End: Original strand, 10835582 - 10835642
Alignment:
Q  607 ttttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgt 667  Q
    ||||| ||| |||||||||||||||||| ||||||||| ||||||||||||||||| ||||    
T  10835582 ttttagcaaattatcctattgacatttgctaaaagacaccaactaatttttatgaaagtgt 10835642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 598 - 669
Target Start/End: Complemental strand, 15661211 - 15661140
Alignment:
Q  598 gaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||| ||||| ||||||||  |||   |||||||||||||||| ||||||||||||||||||||||||    
T  15661211 gaaggtgttttttagcaagttattttataagcatttgttaaaagacaccaactaatttttatgaaggtgtct 15661140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 574 - 669
Target Start/End: Complemental strand, 26213855 - 26213760
Alignment:
Q  574 gttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||| |||||||| ||||| |||||||| ||||| |||||||| ||||   |||||||||||| ||| |||||||| ||||| || ||||||    
T  26213855 gttttgctagaagacacattttacgaaggtgtcttttagcaagttattctatgagcatttgttaaaaaacatcaactaatatttataaatgtgtct 26213760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 570 - 641
Target Start/End: Original strand, 49659888 - 49659959
Alignment:
Q  570 tagggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaag 641  Q
    |||||||||| | |||||||||||| |||||||||| ||||| |||||||| ||||  ||||||||||||||    
T  49659888 tagggttttgttagaagacacctttcatgaaggtgttttttagcaagttattctatgaacatttgttaaaag 49659959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 599 - 657
Target Start/End: Original strand, 36630382 - 36630440
Alignment:
Q  599 aaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaattttt 657  Q
    ||||||| |||||| ||||||||||||||||||||  ||||||||| ||||||||||||    
T  36630382 aaggtgtcttttaaaaagttatcctattgacatttactaaaagacaccaactaattttt 36630440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 584 - 664
Target Start/End: Complemental strand, 30289110 - 30289030
Alignment:
Q  584 aagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaagg 664  Q
    ||||||| ||||||||||| || ||||||||||||||  |||  | |||||||||||| || |||||| ||||||||||||    
T  30289110 aagacacgttttatgaaggcgtcttttaacaagttattttatgaatatttgttaaaaggcaccaactattttttatgaagg 30289030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 614 - 667
Target Start/End: Complemental strand, 8549678 - 8549625
Alignment:
Q  614 aagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgt 667  Q
    ||||||| |||||  ||||||||||||||||  |||||||||||||||||||||    
T  8549678 aagttattctattagcatttgttaaaagacactaactaatttttatgaaggtgt 8549625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 609 - 666
Target Start/End: Complemental strand, 10769890 - 10769833
Alignment:
Q  609 ttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtg 666  Q
    |||||||||||| ||||   |||||| ||||||||| |||||||||||||||||||||    
T  10769890 ttaacaagttattctataagcatttgctaaaagacaccaactaatttttatgaaggtg 10769833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 572 - 611
Target Start/End: Complemental strand, 1469791 - 1469752
Alignment:
Q  572 gggttttgcttgaagacaccttttatgaaggtgtatttta 611  Q
    |||||||||| ||||||||||||||||||||||| |||||    
T  1469791 gggttttgctagaagacaccttttatgaaggtgtctttta 1469752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 574 - 640
Target Start/End: Original strand, 4105513 - 4105579
Alignment:
Q  574 gttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaa 640  Q
    |||||| | ||||||| ||||||||||||||  ||||||||||||||  |||  |||||||||||||    
T  4105513 gttttgttagaagacatcttttatgaaggtgatttttaacaagttattttatcaacatttgttaaaa 4105579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 299
Target Start/End: Original strand, 36630017 - 36630066
Alignment:
Q  250 tgtgattctaacctgaaaaaattgaggacaagaatttcaccaagttcttg 299  Q
    ||||| |||||||||||||||||||||| ||||| || | ||||||||||    
T  36630017 tgtgactctaacctgaaaaaattgaggataagaaattgatcaagttcttg 36630066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 572 - 625
Target Start/End: Complemental strand, 38509778 - 38509725
Alignment:
Q  572 gggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctat 625  Q
    |||||||| | |||||||| |||||||||||||| ||||| ||| |||||||||    
T  38509778 gggttttgttagaagacacattttatgaaggtgtcttttagcaaattatcctat 38509725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 3e-31; HSPs: 41)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 576 - 669
Target Start/End: Original strand, 39328415 - 39328508
Alignment:
Q  576 tttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||    
T  39328415 tttgctagaagacaccttttatgaaggtgtcttttagcaagttatcctattgacatttcttaaaagacaccaactaatttttatgaaagtgtct 39328508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 571 - 669
Target Start/End: Original strand, 6125768 - 6125866
Alignment:
Q  571 agggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||||||| |||||||| |||||||||||||| ||||| ||||||||| ||| |||||||| ||||||||| ||||||||||||||||||||||||    
T  6125768 agggttttgctagaagacacattttatgaaggtgtcttttagcaagttatcttatagacatttgctaaaagacaccaactaatttttatgaaggtgtct 6125866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 571 - 669
Target Start/End: Original strand, 36418711 - 36418809
Alignment:
Q  571 agggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||||||| |||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||| ||| || ||||||| |||||||||    
T  36418711 agggttttgctagaagacaccttttatgaaagtgtcttttagcaagttatcctattgacatttgttaaaagacaccaattattttttatcaaggtgtct 36418809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 571 - 669
Target Start/End: Original strand, 54160386 - 54160484
Alignment:
Q  571 agggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||||||| ||||||||||||||||||||||| ||||| |||||||| ||||   |||||||||||||||| ||||||||||||||||||||||||    
T  54160386 agggttttgctagaagacaccttttatgaaggtgtcttttagcaagttattctataagcatttgttaaaagacaccaactaatttttatgaaggtgtct 54160484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 571 - 667
Target Start/End: Original strand, 9665307 - 9665403
Alignment:
Q  571 agggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgt 667  Q
    ||||||||| |  |||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||||||||  |||||||||||||||||||||    
T  9665307 agggttttgttaaaagacaccttctatgaaggtgtcttttaacaagttattctattaacatttgttaaaagacattaactaatttttatgaaggtgt 9665403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 571 - 667
Target Start/End: Complemental strand, 50090992 - 50090896
Alignment:
Q  571 agggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgt 667  Q
    ||||||||||| ||||||||||||||||||||||| ||||| |||||||| ||||| ||||||| | ||||||| ||||||||||||||||| ||||    
T  50090992 agggttttgctagaagacaccttttatgaaggtgtcttttagcaagttattctattaacatttggtgaaagacaccaactaatttttatgaaagtgt 50090896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 570 - 669
Target Start/End: Complemental strand, 34673631 - 34673532
Alignment:
Q  570 tagggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||| |||||| ||||||||||||||||||||||| ||||| ||||||||  ||||   ||||||||||||||| ||||||||||||||||||||||||    
T  34673631 tagggctttgctagaagacaccttttatgaaggtgtcttttagcaagttattatattagtatttgttaaaagacatcaactaatttttatgaaggtgtct 34673532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 573 - 667
Target Start/End: Complemental strand, 37702730 - 37702636
Alignment:
Q  573 ggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgt 667  Q
    ||||||||| ||||||||||||| |||| |||| ||||| ||||||||||||||| |||||| ||| ||||| ||||||||||||||||||||||    
T  37702730 ggttttgctagaagacaccttttttgaaagtgtcttttagcaagttatcctattggcatttgctaatagacaccaactaatttttatgaaggtgt 37702636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 572 - 669
Target Start/End: Complemental strand, 3283433 - 3283336
Alignment:
Q  572 gggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||||| |||||||| |||||||||||||| ||||| |||||||| ||||   |||||| ||||||||| ||||||||||||||||||||||||    
T  3283433 gggttttgctagaagacacattttatgaaggtgtcttttagcaagttattctatgagcatttgctaaaagacaccaactaatttttatgaaggtgtct 3283336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 570 - 669
Target Start/End: Complemental strand, 21396024 - 21395925
Alignment:
Q  570 tagggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||||||| ||||||||||||||||||||||| ||||| |||||||| ||||   |||||||||||||||| ||||||| |||||| || ||||||    
T  21396024 tagggttttgctagaagacaccttttatgaaggtgttttttagcaagttattctatgagcatttgttaaaagacaccaactaaattttataaatgtgtct 21395925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 572 - 669
Target Start/End: Complemental strand, 54253956 - 54253859
Alignment:
Q  572 gggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||||| |||||| | |||||||||||||||||||| |||||||| ||||   |||||  ||||||||| ||||||||||||||||||||||||    
T  54253956 gggttttgctagaagacgcattttatgaaggtgtattttagcaagttattctatgagcatttcctaaaagacaccaactaatttttatgaaggtgtct 54253859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 571 - 665
Target Start/End: Complemental strand, 13700412 - 13700318
Alignment:
Q  571 agggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattga-catttgttaaaagacagcaactaatttttatgaaggt 665  Q
    ||||||||||| |||||||| |||||||||||||| |||||| ||||||| || |||| |||||| ||||||||| ||||||||||||||||||||    
T  13700412 agggttttgctagaagacacattttatgaaggtgttttttaataagttattct-ttgagcatttgctaaaagacaccaactaatttttatgaaggt 13700318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 573 - 667
Target Start/End: Complemental strand, 54411952 - 54411858
Alignment:
Q  573 ggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgt 667  Q
    ||||||||| ||||||||||||||||||||||| ||||| |||| ||| ||||   |||||| ||||||||| |||||||||||||| |||||||    
T  54411952 ggttttgctagaagacaccttttatgaaggtgttttttagcaagatattctatgatcatttgctaaaagacaccaactaatttttataaaggtgt 54411858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 571 - 667
Target Start/End: Original strand, 42092805 - 42092901
Alignment:
Q  571 agggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgt 667  Q
    ||||||||||| ||||||||||||||||||||||| ||||| |||||||| ||||     |||||||||||||| ||| |||||||||| |||||||    
T  42092805 agggttttgctagaagacaccttttatgaaggtgtcttttagcaagttattctatgagtctttgttaaaagacaccaattaatttttataaaggtgt 42092901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 574 - 669
Target Start/End: Original strand, 45408247 - 45408342
Alignment:
Q  574 gttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||| ||| |||||||||||||| |||| ||||| |||||||| ||||   |||||| |||||||||  |||||||||||||||||||||||    
T  45408247 gttttgctagaaaacaccttttatgaaagtgtcttttagcaagttattctatgagcatttgctaaaagacacaaactaatttttatgaaggtgtct 45408342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 583 - 669
Target Start/End: Original strand, 8351062 - 8351148
Alignment:
Q  583 gaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||| |||||||||||||| ||||| |||||||| ||||   |||||| ||||||||| ||||||||||||||||| ||||||    
T  8351062 gaagacactttttatgaaggtgtcttttagcaagttattctatgagcatttgctaaaagacaccaactaatttttatgaatgtgtct 8351148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 572 - 669
Target Start/End: Original strand, 19855463 - 19855560
Alignment:
Q  572 gggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||||  ||||| ||||||||||||||||| | ||| |||||||| |||    |||||| ||||||||| ||||||||||||||||||||||||    
T  19855463 gggttttgcgagaagaaaccttttatgaaggtgtctattagcaagttattctacgagcatttgctaaaagacaccaactaatttttatgaaggtgtct 19855560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 592 - 669
Target Start/End: Complemental strand, 34673485 - 34673408
Alignment:
Q  592 ttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||||||||| ||||| ||||||||  ||||   ||||||||||||||| ||||||||||||||||||||||||    
T  34673485 ttttatgaaggtgtcttttagcaagttattatattagtatttgttaaaagacatcaactaatttttatgaaggtgtct 34673408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 592 - 669
Target Start/End: Complemental strand, 34673547 - 34673470
Alignment:
Q  592 ttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||||||||| ||||| ||||||||  ||||   ||||||||||||||| ||||||||||||||||||||||||    
T  34673547 ttttatgaaggtgtcttttagcaagttattatattagtatttgttaaaagacatcaactaatttttatgaaggtgtct 34673470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 572 - 667
Target Start/End: Complemental strand, 5232778 - 5232683
Alignment:
Q  572 gggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgt 667  Q
    ||||||||||  ||||||| ||||||||||||||  |||| |||||||| |||    |||||||||||||||| |||||||||||||| |||||||    
T  5232778 gggttttgctacaagacacattttatgaaggtgtcatttagcaagttattctagaagcatttgttaaaagacaccaactaatttttataaaggtgt 5232683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 584 - 667
Target Start/End: Complemental strand, 20513180 - 20513097
Alignment:
Q  584 aagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgt 667  Q
    ||||||| |||||||||||||| ||||| ||| |||| ||||   |||||||||||||||| ||| ||||||||||||||||||    
T  20513180 aagacactttttatgaaggtgtcttttagcaatttattctatgagcatttgttaaaagacaccaattaatttttatgaaggtgt 20513097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 570 - 669
Target Start/End: Complemental strand, 35711991 - 35711892
Alignment:
Q  570 tagggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||||||| |||||||| ||||| || ||||| ||||| |||||||| ||||   |||||| ||||||||| || |||| ||||||||||||||||    
T  35711991 tagggttttgctagaagacacattttacgagggtgtcttttagcaagttattctatgagcatttgctaaaagacaccagctaacttttatgaaggtgtct 35711892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 570 - 669
Target Start/End: Complemental strand, 39867233 - 39867134
Alignment:
Q  570 tagggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||||||| ||||| || ||||||||||||||  |||| ||| |||| ||||  |||||| ||||| || | ||||||||||||||||||||||||    
T  39867233 tagggttttgctagaagaaacattttatgaaggtgtcatttatcaaattattctataaacatttcttaaatgataccaactaatttttatgaaggtgtct 39867134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 599 - 669
Target Start/End: Original strand, 41355439 - 41355509
Alignment:
Q  599 aaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||| |||||||||||||| | ||   |||||||||||||||| ||||||||||||||||||||||||    
T  41355439 aaggtgtcttttaacaagttattcaatgagcatttgttaaaagacaccaactaatttttatgaaggtgtct 41355509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 574 - 669
Target Start/End: Original strand, 8674537 - 8674632
Alignment:
Q  574 gttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||| |||||||||||||||||| |||| ||||| ||||||||  |||   |||||| ||||| | | ||||| ||||||||||||||||||    
T  8674537 gttttgctagaagacaccttttatgaaagtgtcttttagcaagttattttatgagcatttgctaaaacagaccaactgatttttatgaaggtgtct 8674632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 597 - 663
Target Start/End: Original strand, 11238690 - 11238756
Alignment:
Q  597 tgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaag 663  Q
    ||||||||| ||||| |||||||| ||||   |||||||||||||||| ||||||||||||||||||    
T  11238690 tgaaggtgtcttttagcaagttattctatgagcatttgttaaaagacatcaactaatttttatgaag 11238756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 573 - 662
Target Start/End: Original strand, 35180573 - 35180662
Alignment:
Q  573 ggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaa 662  Q
    ||||||||| ||||| |  |||||||||||||| |||||| |||||||  ||||  |||||||||||| ||| ||| |||||||||||||    
T  35180573 ggttttgctagaagatatattttatgaaggtgtcttttaaaaagttattttattagcatttgttaaaatacatcaattaatttttatgaa 35180662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 593 - 669
Target Start/End: Original strand, 36227811 - 36227887
Alignment:
Q  593 tttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||| |||| ||||| ||||||||| ||| | | |||| ||||||||| ||| ||||||||||||||||||||    
T  36227811 tttatgaatgtgttttttagcaagttatcttataggcgtttgctaaaagacaccaattaatttttatgaaggtgtct 36227887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 597 - 669
Target Start/End: Original strand, 52089066 - 52089138
Alignment:
Q  597 tgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||||| ||||| ||||||||  ||| ||||||| |||||| ||| |||||||| |||||||||||||||    
T  52089066 tgaaggtgtcttttagcaagttattgtatagacatttattaaaaaacaccaactaatatttatgaaggtgtct 52089138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 617 - 669
Target Start/End: Complemental strand, 53518985 - 53518933
Alignment:
Q  617 ttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||||||| |||||||||||||||| ||| ||||||||||||| ||||||    
T  53518985 ttatcctattggcatttgttaaaagacaccaattaatttttatgaaagtgtct 53518933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 574 - 669
Target Start/End: Original strand, 52945571 - 52945665
Alignment:
Q  574 gttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||| ||||| || ||||||||| |||| ||||| |||||||| | ||   |||||| |||||| || ||||||||||||||||||||||||    
T  52945571 gttttgctagaaga-acattttatgaaagtgtcttttagcaagttattcaatgagcatttggtaaaaggcaccaactaatttttatgaaggtgtct 52945665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 596 - 662
Target Start/End: Original strand, 4125996 - 4126062
Alignment:
Q  596 atgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaa 662  Q
    |||||||||| |||||||||||||| ||||   |||||| ||||||||| ||| |||||||||||||    
T  4125996 atgaaggtgtcttttaacaagttattctatgagcatttgctaaaagacatcaattaatttttatgaa 4126062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 574 - 620
Target Start/End: Complemental strand, 27027379 - 27027333
Alignment:
Q  574 gttttgcttgaagacaccttttatgaaggtgtattttaacaagttat 620  Q
    |||||||| ||||||||||||||||||||||| ||||| ||||||||    
T  27027379 gttttgctagaagacaccttttatgaaggtgtcttttagcaagttat 27027333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 591 - 669
Target Start/End: Complemental strand, 38101331 - 38101253
Alignment:
Q  591 cttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||||||||||| |||||  ||| ||| ||||   |||||| ||||||||| |||||||||||||| |||||||||    
T  38101331 cttttatgaaggtgttttttagtaagatattctatgatcatttgctaaaagacaccaactaatttttataaaggtgtct 38101253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 628 - 669
Target Start/End: Complemental strand, 27026742 - 27026701
Alignment:
Q  628 acatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||||||||||||| ||||||||||||| ||||||||||    
T  27026742 acatttgttaaaagacaccaactaatttttaggaaggtgtct 27026701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 629 - 669
Target Start/End: Original strand, 19228619 - 19228659
Alignment:
Q  629 catttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||| ||||||||| ||||||||||||||||||||||||    
T  19228619 catttgctaaaagacaccaactaatttttatgaaggtgtct 19228659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 630 - 669
Target Start/End: Complemental strand, 27038086 - 27038047
Alignment:
Q  630 atttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||||||||||| ||||| ||||||||||||||||||    
T  27038086 atttgttaaaagacaccaactcatttttatgaaggtgtct 27038047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 574 - 620
Target Start/End: Original strand, 46770495 - 46770541
Alignment:
Q  574 gttttgcttgaagacaccttttatgaaggtgtattttaacaagttat 620  Q
    |||||||| ||||||||| ||||||||||||| ||||| ||||||||    
T  46770495 gttttgctagaagacaccctttatgaaggtgtcttttagcaagttat 46770541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 583 - 667
Target Start/End: Original strand, 27432054 - 27432139
Alignment:
Q  583 gaagacaccttttatgaaggtgtattttaac-aagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgt 667  Q
    ||||||| ||||||||||| ||| |||| |  ||||||| |||| | |||||  ||||||||| ||| ||||||||||||||||||    
T  27432054 gaagacatcttttatgaagatgtctttttagtaagttattctatgggcatttactaaaagacaccaaataatttttatgaaggtgt 27432139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 598 - 667
Target Start/End: Original strand, 35280433 - 35280502
Alignment:
Q  598 gaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgt 667  Q
    |||||||| ||||| ||||||||  |||   |||||||||||||| |  |||||||||||||||||||||    
T  35280433 gaaggtgtcttttagcaagttattatatgagcatttgttaaaagatacaaactaatttttatgaaggtgt 35280502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 633 - 669
Target Start/End: Original strand, 4043935 - 4043971
Alignment:
Q  633 tgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  4043935 tgttaaaagacaccaactaatttttatgaaggcgtct 4043971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 1e-30; HSPs: 38)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 573 - 669
Target Start/End: Complemental strand, 38498407 - 38498311
Alignment:
Q  573 ggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||||| ||||||||||||||||||||||| ||||| |||||||| ||||| ||||||||||||||||| ||| ||||||||||||||||||||    
T  38498407 ggttttgctagaagacaccttttatgaaggtgtcttttagcaagttattctattaacatttgttaaaagacaccaattaatttttatgaaggtgtct 38498311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 574 - 665
Target Start/End: Original strand, 16784331 - 16784422
Alignment:
Q  574 gttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggt 665  Q
    |||||||| ||||||||||||||||||||||| ||||| ||||||||  |||| ||||||||||||||||| ||||||||||||||||||||    
T  16784331 gttttgctagaagacaccttttatgaaggtgtcttttagcaagttattatattaacatttgttaaaagacaccaactaatttttatgaaggt 16784422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 571 - 669
Target Start/End: Original strand, 14041328 - 14041426
Alignment:
Q  571 agggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||||||  ||| ||| ||||||||||||||| ||||| |||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||    
T  14041328 agggttttgccagaaaacatcttttatgaaggtgttttttagcaagttatcctattgacatttgttaaaaaacaccaattaatttttatgaaggtgtct 14041426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 583 - 669
Target Start/End: Complemental strand, 39077430 - 39077344
Alignment:
Q  583 gaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||||||||||||||||||| ||||| |||||||| ||||  ||||||||||||||||| ||||||||||||||||||||||||    
T  39077430 gaagacaccttttatgaaggtgtcttttagcaagttattctatgaacatttgttaaaagacaccaactaatttttatgaaggtgtct 39077344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 574 - 667
Target Start/End: Original strand, 5224300 - 5224393
Alignment:
Q  574 gttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgt 667  Q
    ||||||||  ||||||| |||||||||||||| |||||||||||||| ||||  ||||||||||||||||| ||||||||||||||||||||||    
T  5224300 gttttgctataagacactttttatgaaggtgtcttttaacaagttattctatgaacatttgttaaaagacaccaactaatttttatgaaggtgt 5224393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 572 - 669
Target Start/End: Original strand, 10078303 - 10078400
Alignment:
Q  572 gggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||||| ||||||||||||||||||||||| ||||| |||||||| ||||   |||||| ||||||||| ||||||||||||||||||||||||    
T  10078303 gggttttgctagaagacaccttttatgaaggtgtcttttagcaagttattctatgagcatttgctaaaagacaccaactaatttttatgaaggtgtct 10078400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 570 - 669
Target Start/End: Complemental strand, 12176366 - 12176267
Alignment:
Q  570 tagggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||| | || ||| ||||||||| ||| |||||||||| |||||||||    
T  12176366 tagggttttgctagaagacaccttttatgaaggtgtgttttagcaagttatcctataggcaattgctaaaagacaccaaataatttttatcaaggtgtct 12176267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 570 - 669
Target Start/End: Complemental strand, 12420794 - 12420695
Alignment:
Q  570 tagggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||| | || ||| ||||||||| ||| |||||||||| |||||||||    
T  12420794 tagggttttgctagaagacaccttttatgaaggtgtgttttagcaagttatcctataggcaattgctaaaagacaccaaataatttttatcaaggtgtct 12420695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 572 - 669
Target Start/End: Complemental strand, 26912480 - 26912383
Alignment:
Q  572 gggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||||| |||||||| ||||||||| |||| |||||||||||||| ||||   |||||| ||||||||| ||||||||||||||||||||||||    
T  26912480 gggttttgctagaagacacattttatgaatgtgtcttttaacaagttattctatgagcatttgctaaaagacaccaactaatttttatgaaggtgtct 26912383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 573 - 669
Target Start/End: Original strand, 9478711 - 9478807
Alignment:
Q  573 ggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||| | |||||||||||| |||||  ||| ||||| |||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  9478711 ggttttgttagaagacacctttaatgaaaatgttttttagcaagttattctattaacatttgttaaaagacaccaactaatttttatgaaggtgtct 9478807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 572 - 665
Target Start/End: Original strand, 30774124 - 30774217
Alignment:
Q  572 gggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggt 665  Q
    |||||||||| ||||||||||||||||||||||| ||||| |||||||| ||||   |||||| ||||||| | ||||||||||||||||||||    
T  30774124 gggttttgctagaagacaccttttatgaaggtgttttttagcaagttattctatgagcatttgctaaaagataccaactaatttttatgaaggt 30774217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 574 - 669
Target Start/End: Original strand, 44873913 - 44874008
Alignment:
Q  574 gttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||| | ||||||||||||||||||||||| ||||| |||||||| ||||   |||||| ||||||||| || |||||||||||||||||||||    
T  44873913 gttttgttagaagacaccttttatgaaggtgttttttagcaagttattctatgagcatttgctaaaagacaccagctaatttttatgaaggtgtct 44874008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 571 - 669
Target Start/End: Complemental strand, 33568227 - 33568129
Alignment:
Q  571 agggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||||| | |||||||| |||||| ||||||| ||||| |||||||| ||||   |||||||||||||||| |||||| |||||||||||||||||    
T  33568227 agggttttgttagaagacacattttataaaggtgtcttttatcaagttattctatgagcatttgttaaaagacaccaactagtttttatgaaggtgtct 33568129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 570 - 669
Target Start/End: Complemental strand, 12295326 - 12295227
Alignment:
Q  570 tagggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||| |||||||  ||||||||||||||||| |||| ||||| |||||||| |||||  |||||||||||||| | ||| ||| ||||||||||||||||    
T  12295326 taggattttgctataagacaccttttatgaatgtgtcttttagcaagttattctattagcatttgttaaaagataccaattaaattttatgaaggtgtct 12295227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 570 - 669
Target Start/End: Original strand, 23472511 - 23472609
Alignment:
Q  570 tagggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||||||| ||||||||||||||||||||||| ||||| | |||||| ||||    ||||| ||||||| | ||||||||||||||||||||||||    
T  23472511 tagggttttgctagaagacaccttttatgaaggtgtcttttagc-agttattctatgaggatttgctaaaagataccaactaatttttatgaaggtgtct 23472609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 572 - 669
Target Start/End: Original strand, 9479413 - 9479510
Alignment:
Q  572 gggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||| | |||||||| |||||||||||||| ||||| |||||||| ||||   |||||| |||||||||  |||||||||||||||| ||||||    
T  9479413 gggttttgttagaagacacattttatgaaggtgtcttttagcaagttattctatgagcatttgctaaaagacacaaactaatttttatgaaagtgtct 9479510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 574 - 667
Target Start/End: Complemental strand, 16930960 - 16930867
Alignment:
Q  574 gttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgt 667  Q
    |||||| | ||||| ||||||||||||||||| ||||| |||||||| ||||   ||||| |||||||||| ||||||||||||||||| ||||    
T  16930960 gttttgatagaagataccttttatgaaggtgtcttttagcaagttattctatgagcattttttaaaagacaccaactaatttttatgaaagtgt 16930867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 574 - 667
Target Start/End: Complemental strand, 40067708 - 40067615
Alignment:
Q  574 gttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgt 667  Q
    ||||| || ||||||| | |||||||| |||| ||||| |||||||| ||||  | ||||||||||||||| ||||||||||||||||||||||    
T  40067708 gtttttctagaagacatcatttatgaatgtgtcttttagcaagttattctataaatatttgttaaaagacaccaactaatttttatgaaggtgt 40067615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 574 - 669
Target Start/End: Complemental strand, 1983634 - 1983539
Alignment:
Q  574 gttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||| || |||||||| |||||||||||||| ||||||||| |||| ||||  | ||||||||||| | | ||||||||||||||||| ||||||    
T  1983634 gttttactggaagacacattttatgaaggtgtcttttaacaaattattctataaaaatttgttaaaaaatatcaactaatttttatgaaagtgtct 1983539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 599 - 669
Target Start/End: Complemental strand, 254081 - 254011
Alignment:
Q  599 aaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||| |||||||||||||| ||||  ||||||||||||||||| ||||||||||||| ||| ||||||    
T  254081 aaggtgtcttttaacaagttattctatgaacatttgttaaaagacaccaactaatttttaggaaagtgtct 254011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 599 - 669
Target Start/End: Original strand, 661777 - 661847
Alignment:
Q  599 aaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||| |||||||||||||| ||||  ||||||||||||||||| ||||||||||||| ||| ||||||    
T  661777 aaggtgtcttttaacaagttattctatgaacatttgttaaaagacaccaactaatttttaggaaagtgtct 661847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 574 - 669
Target Start/End: Complemental strand, 1271182 - 1271083
Alignment:
Q  574 gttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttg----ttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||| ||||||||| ||||| ||||||| |||||||||||||||||||    |||||    |||||| ||| ||||||||||||||||||||||||    
T  1271182 gttttgctagaagacaccctttataaaggtgttttttaacaagttatcctatatgtatttgctaattaaaatacaccaactaatttttatgaaggtgtct 1271083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 575 - 669
Target Start/End: Complemental strand, 13327084 - 13326991
Alignment:
Q  575 ttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||| |||||||| |||||||||||| | ||||| ||||||||  ||| |||||||| ||||||||  |||||||||||||||||| |||||    
T  13327084 ttttgctagaagacacattttatgaaggtatcttttagcaagttattttat-gacatttgctaaaagacgccaactaatttttatgaagttgtct 13326991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 571 - 669
Target Start/End: Original strand, 28539161 - 28539259
Alignment:
Q  571 agggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||||| | |||||||| |||||||||  ||| ||||| ||||||||  |||   |||||||||||||| | ||||||||||||||||||||||||    
T  28539161 agggttttgttagaagacacattttatgaatatgtcttttagcaagttattttatgagcatttgttaaaagataccaactaatttttatgaaggtgtct 28539259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 583 - 669
Target Start/End: Complemental strand, 31272921 - 31272835
Alignment:
Q  583 gaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||| |||||||||||||| ||||||||| |||| ||||    ||||||||||||||| |||||||||||||| ||| |||||    
T  31272921 gaagacacattttatgaaggtgttttttaacaaattattctatgagtatttgttaaaagacaacaactaatttttataaagatgtct 31272835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 574 - 669
Target Start/End: Original strand, 42806210 - 42806307
Alignment:
Q  574 gttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctat-tga-catttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||| ||||||||||||||||||| ||| ||||| ||| ||||  ||| ||| ||||||||| ||||||  |||||||||||||||||||||||    
T  42806210 gttttgctagaagacaccttttatgaagatgtcttttagcaaattattttatatgagcatttgttagaagacacaaactaatttttatgaaggtgtct 42806307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 584 - 644
Target Start/End: Original strand, 10775933 - 10775993
Alignment:
Q  584 aagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagaca 644  Q
    ||||||||||||||||| |||  ||||| ||||||||||||||||||||| ||||||||||    
T  10775933 aagacaccttttatgaaagtgccttttagcaagttatcctattgacattttttaaaagaca 10775993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 599 - 658
Target Start/End: Original strand, 847575 - 847634
Alignment:
Q  599 aaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaattttta 658  Q
    ||||||| |||||||||||||| ||||  ||||||||||||||||| |||||||||||||    
T  847575 aaggtgtcttttaacaagttattctatgaacatttgttaaaagacaccaactaattttta 847634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 594 - 669
Target Start/End: Complemental strand, 41829655 - 41829580
Alignment:
Q  594 ttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||| ||| ||||| |||||||| ||||  |||||||||||||||||  ||||||||||||||||| |||||    
T  41829655 ttatgaagatgtcttttagcaagttattctatgaacatttgttaaaagacacaaactaatttttatgaagatgtct 41829580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 575 - 669
Target Start/End: Complemental strand, 22812476 - 22812383
Alignment:
Q  575 ttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||| |||||||| |||||| | ||| | ||||| || ||||| ||||   |||||||||||||||| ||||||||||||||||||||||||    
T  22812476 ttttgctagaagacacattttatta-ggtatcttttagcacgttattctatgagcatttgttaaaagacaccaactaatttttatgaaggtgtct 22812383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 585 - 662
Target Start/End: Complemental strand, 28969244 - 28969168
Alignment:
Q  585 agacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaa 662  Q
    ||||||||||| ||||||||| ||||| ||| |||| ||||   |||||||||||||||| ||| |||||||||||||    
T  28969244 agacacctttt-tgaaggtgttttttagcaatttattctatgagcatttgttaaaagacaccaattaatttttatgaa 28969168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 570 - 611
Target Start/End: Complemental strand, 39590036 - 39589995
Alignment:
Q  570 tagggttttgcttgaagacaccttttatgaaggtgtatttta 611  Q
    |||||||||||| ||||||||||||||||||||||| |||||    
T  39590036 tagggttttgctagaagacaccttttatgaaggtgtctttta 39589995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 574 - 659
Target Start/End: Original strand, 44473748 - 44473833
Alignment:
Q  574 gttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttat 659  Q
    |||||| | ||||||| |||| |||||||||| ||||| ||||||||  |||    ||||||||||||||| ||||||||||||||    
T  44473748 gttttgttagaagacatctttcatgaaggtgtcttttagcaagttattgtatgagtatttgttaaaagacaccaactaatttttat 44473833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 576 - 620
Target Start/End: Complemental strand, 14371658 - 14371614
Alignment:
Q  576 tttgcttgaagacaccttttatgaaggtgtattttaacaagttat 620  Q
    |||||| ||||||||||||||||||||||| ||||| ||||||||    
T  14371658 tttgctagaagacaccttttatgaaggtgtcttttagcaagttat 14371614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 629 - 669
Target Start/End: Original strand, 19922566 - 19922606
Alignment:
Q  629 catttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||||||||||| ||| ||||||||||||||||||||    
T  19922566 catttgttaaaagacaccaattaatttttatgaaggtgtct 19922606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 570 - 665
Target Start/End: Complemental strand, 14916822 - 14916727
Alignment:
Q  570 tagggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggt 665  Q
    |||| |||||||  |||| | ||| |||||| |||| ||||| |||||||| ||||   |||||| ||||||| | ||||||||||||||||||||    
T  14916822 taggattttgctataagatatcttatatgaatgtgttttttagcaagttattctatgagcatttgctaaaagataccaactaatttttatgaaggt 14916727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 572 - 611
Target Start/End: Complemental strand, 16645576 - 16645537
Alignment:
Q  572 gggttttgcttgaagacaccttttatgaaggtgtatttta 611  Q
    |||||||||| ||||||||||||||||||||||| |||||    
T  16645576 gggttttgctagaagacaccttttatgaaggtgtctttta 16645537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 574 - 611
Target Start/End: Complemental strand, 3210961 - 3210924
Alignment:
Q  574 gttttgcttgaagacaccttttatgaaggtgtatttta 611  Q
    |||||||| ||||||||||||||||||||||| |||||    
T  3210961 gttttgctagaagacaccttttatgaaggtgtctttta 3210924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 5e-30; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 570 - 669
Target Start/End: Original strand, 6137256 - 6137355
Alignment:
Q  570 tagggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||||||| |||||||||||||||||| |||| ||||| |||||||| |||||  |||||||||||||||| ||||||||||||||||||||||||    
T  6137256 tagggttttgctagaagacaccttttatgaatgtgtcttttagcaagttattctattagcatttgttaaaagacaccaactaatttttatgaaggtgtct 6137355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 574 - 669
Target Start/End: Complemental strand, 38427228 - 38427133
Alignment:
Q  574 gttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||| |||||||||||||||||| |||| ||||| |||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  38427228 gttttgctagaagacaccttttatgaaagtgtcttttagcaagttattctattaacatttgttaaaagacaccaactaatttttatgaaggtgtct 38427133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 571 - 668
Target Start/End: Complemental strand, 43837852 - 43837755
Alignment:
Q  571 agggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtc 668  Q
    ||||||||||| |||||||||||||||||||||||  |||| ||||||||||||| | |||||| ||||||||| |||||||||||||||||||||||    
T  43837852 agggttttgctagaagacaccttttatgaaggtgtcgtttagcaagttatcctataggcatttgctaaaagacaccaactaatttttatgaaggtgtc 43837755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 573 - 669
Target Start/End: Complemental strand, 51682719 - 51682623
Alignment:
Q  573 ggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||||| ||| ||||||||||||||||||| ||||| |||||||| ||||  ||||||||||||||||| ||||||||||||||||||||||||    
T  51682719 ggttttgctagaaaacaccttttatgaaggtgttttttagcaagttattctatgaacatttgttaaaagacaccaactaatttttatgaaggtgtct 51682623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 571 - 669
Target Start/End: Complemental strand, 34728382 - 34728284
Alignment:
Q  571 agggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||||||| ||||||||||||||||||||||| ||||| |||||||| ||||   |||||| ||||||||| ||||||||||||||||||||||||    
T  34728382 agggttttgctagaagacaccttttatgaaggtgtcttttagcaagttattctataagcatttgctaaaagacaccaactaatttttatgaaggtgtct 34728284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 583 - 669
Target Start/End: Complemental strand, 47960445 - 47960359
Alignment:
Q  583 gaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||||||||||||||||||| ||||| ||||||||||||| | |||||| ||||||||| ||||||||||||||||||||||||    
T  47960445 gaagacaccttttatgaaggtgtcttttagcaagttatcctataggcatttgctaaaagacaccaactaatttttatgaaggtgtct 47960359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 574 - 669
Target Start/End: Original strand, 19329360 - 19329455
Alignment:
Q  574 gttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||| ||| ||| ||||||||||||||||||||||||| |||| ||||   |||||||||||||||| ||||||||||||||||||||||||    
T  19329360 gttttgctagaaaacatcttttatgaaggtgtattttaacaaattattctatgatcatttgttaaaagacaccaactaatttttatgaaggtgtct 19329455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 571 - 669
Target Start/End: Complemental strand, 42434391 - 42434293
Alignment:
Q  571 agggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||||| | |||||||||||||| |||||||| ||||| |||||||| ||||   |||||||||||||||| ||||||||||||||||||||||||    
T  42434391 agggttttgttagaagacaccttttaggaaggtgttttttagcaagttattctatgagcatttgttaaaagacaccaactaatttttatgaaggtgtct 42434293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 573 - 669
Target Start/End: Complemental strand, 32090123 - 32090027
Alignment:
Q  573 ggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||||| ||||||| ||||||||||||||| ||||| ||||||||  ||||  |||||||||||||||| ||||||||||||||||| ||||||    
T  32090123 ggttttgctagaagacatcttttatgaaggtgtcttttagcaagttattttattagcatttgttaaaagacaccaactaatttttatgaatgtgtct 32090027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 570 - 669
Target Start/End: Original strand, 13386980 - 13387079
Alignment:
Q  570 tagggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||||||| |||||||| |||||| ||||||| ||||| |||||||| ||||   |||||| ||||||||| ||||||||||||||||||||||||    
T  13386980 tagggttttgctagaagacacattttataaaggtgtcttttagcaagttattctatgagcatttgctaaaagacaccaactaatttttatgaaggtgtct 13387079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 575 - 669
Target Start/End: Original strand, 5975657 - 5975751
Alignment:
Q  575 ttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||| |||||||| |||||||||||||| ||||| ||||||||  ||||  |||||||| ||||||| ||||||||||||||||||||||||    
T  5975657 ttttgctagaagacacattttatgaaggtgtcttttagcaagttattatattagcatttgttgaaagacaccaactaatttttatgaaggtgtct 5975751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 573 - 666
Target Start/End: Original strand, 13387863 - 13387955
Alignment:
Q  573 ggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtg 666  Q
    ||||||||| || ||||| |||||||| ||||| ||||| |||||||||||||||||||||||||||||||| |||| ||||||||| ||||||    
T  13387863 ggttttgctagatgacacattttatga-ggtgtcttttagcaagttatcctattgacatttgttaaaagacaccaacaaatttttataaaggtg 13387955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 572 - 669
Target Start/End: Original strand, 20835705 - 20835802
Alignment:
Q  572 gggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||||||  |||||||||||||||||||||| ||||| |||||||| |||||  |||||||||||||| | ||||||| ||||| ||||||||||    
T  20835705 gggttttgctataagacaccttttatgaaggtgtcttttagcaagttattctattagcatttgttaaaagataccaactaaattttacgaaggtgtct 20835802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 570 - 669
Target Start/End: Original strand, 20503429 - 20503528
Alignment:
Q  570 tagggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||||||| |||| |||||||||||||||||| ||||| |||| ||| ||||   |||||| ||||||||| |||||||||||||| |||||||||    
T  20503429 tagggttttgctagaaggcaccttttatgaaggtgttttttagcaagatattctatgatcatttgctaaaagacaccaactaatttttataaaggtgtct 20503528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 570 - 669
Target Start/End: Original strand, 51702453 - 51702552
Alignment:
Q  570 tagggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||||||| |||||||||| ||||||| |||| ||||| |||||||| ||||   |||||| ||||||| | ||||||||||||||||||||||||    
T  51702453 tagggttttgctagaagacacctcttatgaaagtgtcttttagcaagttattctatgagcatttgctaaaagaaaccaactaatttttatgaaggtgtct 51702552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 576 - 667
Target Start/End: Original strand, 52719062 - 52719153
Alignment:
Q  576 tttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgt 667  Q
    |||||| |||||||| ||||||||||||||  |||||||| |||| |||||  |||||||||||||||| ||||||||||||| ||||||||    
T  52719062 tttgctagaagacacattttatgaaggtgttctttaacaaattattctattagcatttgttaaaagacatcaactaatttttacgaaggtgt 52719153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 584 - 669
Target Start/End: Complemental strand, 11020497 - 11020412
Alignment:
Q  584 aagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||||||||||||||||| ||||| |||||||| ||||  ||||||||||||||| | ||| || |||||||||||||||||    
T  11020497 aagacaccttttatgaaggtgtgttttagcaagttattctatgaacatttgttaaaagataccaattattttttatgaaggtgtct 11020412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 584 - 669
Target Start/End: Complemental strand, 32626211 - 32626126
Alignment:
Q  584 aagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||||||||||||||||| ||||| |||||||| ||||   |||||| ||||||||| |||||||||||||||||| |||||    
T  32626211 aagacaccttttatgaaggtgtcttttagcaagttattctatgagcatttgctaaaagacaccaactaatttttatgaagttgtct 32626126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 572 - 651
Target Start/End: Original strand, 22254221 - 22254300
Alignment:
Q  572 gggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaacta 651  Q
    |||||||||| |||||||  |||||||||||||| ||||| |||||||| |||||| |||||||||||||||| ||||||    
T  22254221 gggttttgctagaagacattttttatgaaggtgtcttttagcaagttattctattggcatttgttaaaagacaccaacta 22254300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 574 - 669
Target Start/End: Original strand, 33117514 - 33117609
Alignment:
Q  574 gttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||| ||||| ||||||||||||||||||||||| |||| ||| ||||   |||||| |||||| || |||||||||||||| |||||||||    
T  33117514 gttttgctagaagataccttttatgaaggtgtattttagcaagatattctatgatcatttgctaaaagtcaccaactaatttttataaaggtgtct 33117609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 573 - 669
Target Start/End: Complemental strand, 48860883 - 48860790
Alignment:
Q  573 ggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||||| ||||||||||||||| ||||||| ||||| |||||||| ||||   |||||||||||||||| |||||||   ||||||||||||||    
T  48860883 ggttttgctagaagacaccttttataaaggtgtcttttagcaagttattctatgagcatttgttaaaagacaccaactaa---ttatgaaggtgtct 48860790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 574 - 669
Target Start/End: Complemental strand, 34041351 - 34041256
Alignment:
Q  574 gttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||| |||||||| ||||||||| |||| ||||| |||||||  ||||   |||||||||||||||| ||| ||||||| ||||||||||||    
T  34041351 gttttgctagaagacacattttatgaatgtgtcttttagcaagttactctataagcatttgttaaaagacaccaagtaattttaatgaaggtgtct 34041256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 584 - 667
Target Start/End: Original strand, 40479857 - 40479940
Alignment:
Q  584 aagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgt 667  Q
    |||||||||||||||||  ||| |||||  || |||  | ||| ||||||||||||||||| ||||||||||||||||||||||    
T  40479857 aagacaccttttatgaatatgttttttagtaatttactcaattaacatttgttaaaagacatcaactaatttttatgaaggtgt 40479940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 595 - 665
Target Start/End: Complemental strand, 16467295 - 16467225
Alignment:
Q  595 tatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggt 665  Q
    ||||||||||| ||||||||||||||  |||  |||||||||||||  || ||||||||||||||||||||    
T  16467295 tatgaaggtgtcttttaacaagttattatatgaacatttgttaaaaagcaccaactaatttttatgaaggt 16467225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 570 - 620
Target Start/End: Original strand, 54158113 - 54158163
Alignment:
Q  570 tagggttttgcttgaagacaccttttatgaaggtgtattttaacaagttat 620  Q
    |||||||||||| ||||||||||||||||||||||| ||||| ||||||||    
T  54158113 tagggttttgctagaagacaccttttatgaaggtgtcttttagcaagttat 54158163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 602 - 667
Target Start/End: Original strand, 32868013 - 32868078
Alignment:
Q  602 gtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgt 667  Q
    |||| |||||||||||||| ||||   |||||| ||||||||| ||||||||||||||||||||||    
T  32868013 gtgtcttttaacaagttattctatgagcatttgctaaaagacaccaactaatttttatgaaggtgt 32868078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 597 - 669
Target Start/End: Original strand, 13372395 - 13372467
Alignment:
Q  597 tgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||||| ||||| |||||||| | ||   |||||| ||||||||| ||||||||||||||||||||||||    
T  13372395 tgaaggtgtcttttagcaagttattccatgagcatttgctaaaagacaccaactaatttttatgaaggtgtct 13372467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 597 - 669
Target Start/End: Original strand, 13382596 - 13382668
Alignment:
Q  597 tgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||||| ||||| |||||||| | ||   |||||| ||||||||| ||||||||||||||||||||||||    
T  13382596 tgaaggtgtcttttagcaagttattccatgagcatttgctaaaagacaccaactaatttttatgaaggtgtct 13382668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 629 - 669
Target Start/End: Original strand, 27907045 - 27907085
Alignment:
Q  629 catttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  27907045 catttgttaaaagacaccaactaatttttatgaaggtgtct 27907085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 574 - 669
Target Start/End: Original strand, 52344494 - 52344589
Alignment:
Q  574 gttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||| |||||||| ||||||||| || |  ||||| | ||||| ||||   |||||||||||||||| |||||||| |||||||| ||||||    
T  52344494 gttttgctagaagacacattttatgaatgtatcatttaatatgttattctataagcatttgttaaaagacaccaactaatatttatgaatgtgtct 52344589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 595 - 669
Target Start/End: Complemental strand, 6944698 - 6944624
Alignment:
Q  595 tatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||||||| ||||| |||||||| ||||   |||||| |||| |||| ||||||| ||||||||||||||||    
T  6944698 tatgaaggtgtcttttagcaagttattctatgagcatttgctaaacgacaccaactaagttttatgaaggtgtct 6944624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 592 - 669
Target Start/End: Original strand, 28755403 - 28755483
Alignment:
Q  592 ttttatgaaggtgtattttaacaagttatcctatt--ga-catttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||||||||| ||||||||||||||  | ||  || |||||||||||||||| ||| |||||||||||||| |||||    
T  28755403 ttttatgaaggtgtcttttaacaagttattattttatgagcatttgttaaaagacaccaattaatttttatgaagttgtct 28755483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 575 - 644
Target Start/End: Complemental strand, 38963400 - 38963331
Alignment:
Q  575 ttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagaca 644  Q
    ||||||| |||||||||||||||||| |||| ||||| |||||||| ||||   |||||| |||||||||    
T  38963400 ttttgctagaagacaccttttatgaatgtgtcttttagcaagttattctatgagcatttgctaaaagaca 38963331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 630 - 669
Target Start/End: Original strand, 40875268 - 40875307
Alignment:
Q  630 atttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||| ||||||| ||||||||||||||||||||||||    
T  40875268 atttgttcaaagacaccaactaatttttatgaaggtgtct 40875307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 573 - 603
Target Start/End: Complemental strand, 7645980 - 7645950
Alignment:
Q  573 ggttttgcttgaagacaccttttatgaaggt 603  Q
    |||||||||||||||||||||||||||||||    
T  7645980 ggttttgcttgaagacaccttttatgaaggt 7645950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 2e-29; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 571 - 669
Target Start/End: Complemental strand, 42373616 - 42373518
Alignment:
Q  571 agggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||||||| |||||||||||||||||| |||| ||||| ||| |||||||||||||||||||||||||||| ||| |||||||||||||| |||||    
T  42373616 agggttttgctagaagacaccttttatgaatgtgtcttttagcaaattatcctattgacatttgttaaaagacaccaattaatttttatgaagatgtct 42373518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 572 - 665
Target Start/End: Complemental strand, 43077650 - 43077557
Alignment:
Q  572 gggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggt 665  Q
    |||||||||| ||||||||||||||||||||||| ||||| |||||| | ||||||||||||||||||||||| |||||||||||||| |||||    
T  43077650 gggttttgctagaagacaccttttatgaaggtgttttttagcaagtttttctattgacatttgttaaaagacaccaactaatttttatcaaggt 43077557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 572 - 669
Target Start/End: Original strand, 27130995 - 27131092
Alignment:
Q  572 gggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||||| ||||||||| ||||||||||||| ||||| ||||||||| ||| | |||||| ||||||||| ||||||||||||||||||||||||    
T  27130995 gggttttgctagaagacaccctttatgaaggtgttttttagcaagttatcttataggcatttgctaaaagacaccaactaatttttatgaaggtgtct 27131092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 572 - 669
Target Start/End: Original strand, 45099969 - 45100066
Alignment:
Q  572 gggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||||| |||||||| |||||||||||||| |||||||||||||| | ||   |||||||||||||||| ||||||||||||||||||||||||    
T  45099969 gggttttgctagaagacacattttatgaaggtgttttttaacaagttattcaatgagcatttgttaaaagacaccaactaatttttatgaaggtgtct 45100066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 570 - 669
Target Start/End: Complemental strand, 48227390 - 48227291
Alignment:
Q  570 tagggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||| ||| ||||   |||||| ||||||||| |||||||||||||| |||||||||    
T  48227390 tagggttttgctggaagacaccttttatgaaggtgtattttagcaagatattctatgatcatttgctaaaagacaccaactaatttttataaaggtgtct 48227291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 571 - 669
Target Start/End: Complemental strand, 3203449 - 3203351
Alignment:
Q  571 agggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||||||| ||||| ||||||||||||||||| ||||| |||||||| ||||   |||||||| ||||||| ||||||||||||||||||||||||    
T  3203449 agggttttgctagaagataccttttatgaaggtgtcttttagcaagttattctatgagcatttgtttaaagacaccaactaatttttatgaaggtgtct 3203351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 575 - 669
Target Start/End: Original strand, 21993471 - 21993565
Alignment:
Q  575 ttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||| |||||||| |||||||||||||| ||||| |||||||| |||||  ||||| |||||||||| ||||||||||||||||||||||||    
T  21993471 ttttgctagaagacacattttatgaaggtgtcttttagcaagttattctattagcattttttaaaagacaccaactaatttttatgaaggtgtct 21993565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 570 - 667
Target Start/End: Original strand, 38368156 - 38368253
Alignment:
Q  570 tagggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgt 667  Q
    ||||||| |||| |||||||||||||||||| |||| ||||| |||| |||| |||| ||||||| ||||||||| ||||||||||||||||||||||    
T  38368156 tagggttatgctagaagacaccttttatgaatgtgtcttttagcaagatatcatattaacatttgctaaaagacaccaactaatttttatgaaggtgt 38368253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 583 - 669
Target Start/End: Complemental strand, 12362978 - 12362892
Alignment:
Q  583 gaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||||| |||||||| |||| |||||||||||||| |||| |||||||||||||||||| |||| ||||||||||||| |||||    
T  12362978 gaagacaccctttatgaatgtgtcttttaacaagttattctatagacatttgttaaaagacatcaacaaatttttatgaagatgtct 12362892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 572 - 669
Target Start/End: Complemental strand, 5995210 - 5995113
Alignment:
Q  572 gggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||||| |||||||||||||||||| |||| ||||| ||||||||  |||   |||||| ||||||||| ||||||||||||||||||||||||    
T  5995210 gggttttgctagaagacaccttttatgaaagtgtcttttagcaagttattatatgagcatttgctaaaagacaccaactaatttttatgaaggtgtct 5995113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 574 - 669
Target Start/End: Original strand, 24251831 - 24251924
Alignment:
Q  574 gttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||| ||||||||||||||||||||||||||  | |||||||||||||   |||||| ||||||||| ||| ||||||||||||||||||||    
T  24251831 gttttgctagaagacaccttttatgaaggtgtatt--agcaagttatcctataagcatttgctaaaagacaccaattaatttttatgaaggtgtct 24251924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 571 - 667
Target Start/End: Original strand, 31953156 - 31953252
Alignment:
Q  571 agggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgt 667  Q
    ||||||||||| ||| ||||||||||||||||||| ||||| |||||||  ||||   |||||||||||||||| ||| ||||||||||||||||||    
T  31953156 agggttttgctagaacacaccttttatgaaggtgtcttttagcaagttagtctatgagcatttgttaaaagacatcaattaatttttatgaaggtgt 31953252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 573 - 669
Target Start/End: Complemental strand, 41378527 - 41378431
Alignment:
Q  573 ggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||||| |||||||| |||||| ||||||| ||||| |||||||| ||||  ||||||| ||||||||| ||| ||||||||||||||||||||    
T  41378527 ggttttgctagaagacactttttattaaggtgttttttagcaagttattctatgaacatttgctaaaagacaccaattaatttttatgaaggtgtct 41378431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 572 - 656
Target Start/End: Original strand, 3875107 - 3875189
Alignment:
Q  572 gggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttt 656  Q
    |||||||||| |||||||| ||||||||| |||||||||| |||||||||||||  ||||||||||||||||  |||||||||||    
T  3875107 gggttttgctagaagacacattttatgaaagtgtattttagcaagttatcctataaacatttgttaaaagac--caactaatttt 3875189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 575 - 667
Target Start/End: Original strand, 3961178 - 3961270
Alignment:
Q  575 ttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgt 667  Q
    ||||||| |||||||| ||||||||| |||| ||||| |||||||| ||||   |||||||||||||||| |||||||||||||| |||||||    
T  3961178 ttttgctagaagacacattttatgaaagtgtcttttagcaagttattctatgatcatttgttaaaagacaccaactaatttttattaaggtgt 3961270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 574 - 669
Target Start/End: Complemental strand, 27946978 - 27946883
Alignment:
Q  574 gttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||| ||||||||  |||||| |||||| ||||| |||||||| |||| |  ||||||||||| ||| ||||||||||||||||||||||||    
T  27946978 gttttgctagaagacactctttatggaggtgtcttttagcaagttattctatagctatttgttaaaacacaccaactaatttttatgaaggtgtct 27946883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 574 - 669
Target Start/End: Complemental strand, 35221825 - 35221725
Alignment:
Q  574 gttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctatt----ga-catttgttaaaagacagcaactaatttttatgaaggtgtc 668  Q
    |||||||| ||||| || |||||||||||||| ||||| |||||||| |||||    || |||||||||||||||| |||||||||||||||||||||||    
T  35221825 gttttgctagaagatactttttatgaaggtgtcttttagcaagttattctattctatgagcatttgttaaaagacaccaactaatttttatgaaggtgtc 35221726  T
Q  669 t 669  Q
    |    
T  35221725 t 35221725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 573 - 665
Target Start/End: Original strand, 35983106 - 35983198
Alignment:
Q  573 ggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggt 665  Q
    ||||||||| |||||||| |||||||||| ||| ||||| |||||||| ||||   |||||| ||||||||| ||| ||||||||||||||||    
T  35983106 ggttttgctagaagacacattttatgaagatgtcttttagcaagttattctatgagcatttgctaaaagacaccaattaatttttatgaaggt 35983198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 573 - 665
Target Start/End: Original strand, 36004518 - 36004610
Alignment:
Q  573 ggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggt 665  Q
    ||||||||| |||||||| |||||||||| ||| ||||| |||||||| ||||   |||||| ||||||||| ||| ||||||||||||||||    
T  36004518 ggttttgctagaagacacattttatgaagatgtcttttagcaagttattctatgagcatttgctaaaagacaccaattaatttttatgaaggt 36004610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 572 - 669
Target Start/End: Complemental strand, 46003890 - 46003792
Alignment:
Q  572 gggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattga-catttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||||| |||||||| ||| |||||||||| ||||| |||||||  ||||  | |||||| ||||||||| |||||||||||||| |||||||||    
T  46003890 gggttttgctagaagacacatttcatgaaggtgtcttttagcaagttactctatgaagcatttgctaaaagacatcaactaatttttataaaggtgtct 46003792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 587 - 669
Target Start/End: Original strand, 20568271 - 20568354
Alignment:
Q  587 acaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaa-tttttatgaaggtgtct 669  Q
    ||||| |||||||| |||| ||||| |||||||||||||| ||||||| ||||||||| ||| ||| ||||||| |||||||||    
T  20568271 acaccctttatgaatgtgtcttttagcaagttatcctattaacatttgctaaaagacaccaagtaattttttatcaaggtgtct 20568354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 583 - 669
Target Start/End: Original strand, 41037134 - 41037220
Alignment:
Q  583 gaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||||||||||||||||||| |||||  || |||| ||||   |||||| |||||||||  |||||| ||||||||||||||||    
T  41037134 gaagacaccttttatgaaggtgtcttttagtaaattattctatgagcatttggtaaaagacacaaactaagttttatgaaggtgtct 41037220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 607 - 669
Target Start/End: Complemental strand, 41586001 - 41585939
Alignment:
Q  607 ttttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||| || ||||| |||||  |||||||||||||||| ||||||||||||||||||||||||    
T  41586001 ttttagcaggttattctattagcatttgttaaaagacaccaactaatttttatgaaggtgtct 41585939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 608 - 669
Target Start/End: Complemental strand, 48709156 - 48709095
Alignment:
Q  608 tttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||| ||||||||||||| | |||||| |||||||||  |||||||||||||||||||||||    
T  48709156 tttagcaagttatcctataggcatttgctaaaagacactaactaatttttatgaaggtgtct 48709095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 570 - 618
Target Start/End: Complemental strand, 32392335 - 32392287
Alignment:
Q  570 tagggttttgcttgaagacaccttttatgaaggtgtattttaacaagtt 618  Q
    |||||||||||| ||||||||||||||||||||||| ||||| ||||||    
T  32392335 tagggttttgctagaagacaccttttatgaaggtgtcttttagcaagtt 32392287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 592 - 659
Target Start/End: Original strand, 36343021 - 36343088
Alignment:
Q  592 ttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttat 659  Q
    |||||||||| ||| ||||||||||||||  |||   |||||||||||||||| ||||||||||||||    
T  36343021 ttttatgaagatgttttttaacaagttattttatgagcatttgttaaaagacaccaactaatttttat 36343088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 595 - 669
Target Start/End: Original strand, 24611437 - 24611511
Alignment:
Q  595 tatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||||||| ||||| |||||||| || |   ||||| |||||||| | ||||||||||||||||| ||||||    
T  24611437 tatgaaggtgtcttttagcaagttattctctgagcatttattaaaagataccaactaatttttatgaaagtgtct 24611511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 570 - 611
Target Start/End: Complemental strand, 48625043 - 48625002
Alignment:
Q  570 tagggttttgcttgaagacaccttttatgaaggtgtatttta 611  Q
    ||||||||||||  |||||||||||||||||||||| |||||    
T  48625043 tagggttttgctataagacaccttttatgaaggtgtctttta 48625002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 574 - 668
Target Start/End: Complemental strand, 18924692 - 18924598
Alignment:
Q  574 gttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtc 668  Q
    |||||||| ||||||||||||||||||||||| ||||| |||||||| ||||  ||||||||||||||||| |||||||||||||||||||||||    
T  18924692 gttttgctagaagacaccttttatgaaggtgtcttttagcaagttattctatgaacatttgttaaaagacaccaactaatttttatgaaggtgtc 18924598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 572 - 669
Target Start/End: Original strand, 33740233 - 33740330
Alignment:
Q  572 gggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||| || ||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||| |||||||||||||| || ||||||    
T  33740233 gggttttactagaagacaccttttatgaaggtgtcttttagcaagttatcctattgacatttcttaaaagacaccaactaatttttataaatgtgtct 33740330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 573 - 669
Target Start/End: Complemental strand, 39089257 - 39089161
Alignment:
Q  573 ggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||| | |||||||||||||||||| |||| |||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||| |||||    
T  39089257 ggttttgttagaagacaccttttatgaatgtgtcttttaacaagttattctattaacatttgttaaaagacaccaactaatttttatgaagatgtct 39089161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 573 - 669
Target Start/End: Complemental strand, 1750072 - 1749976
Alignment:
Q  573 ggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||||| |||||||| |||||||||||||| ||||| || ||||| |||||  |||||||||||||||| ||||||||||||||||||||||||    
T  1750072 ggttttgctagaagacacattttatgaaggtgtcttttagcaggttattctattagcatttgttaaaagacaccaactaatttttatgaaggtgtct 1749976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 573 - 669
Target Start/End: Complemental strand, 29471788 - 29471692
Alignment:
Q  573 ggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||||| ||||||||||||||||||||||| ||||| |||||||| ||||  ||||||| |||||||||  |||||||||||||||||||||||    
T  29471788 ggttttgctagaagacaccttttatgaaggtgtcttttagcaagttattctatgaacatttgctaaaagacacaaactaatttttatgaaggtgtct 29471692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 574 - 669
Target Start/End: Complemental strand, 39435084 - 39434989
Alignment:
Q  574 gttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||| |||||||||||||||||| |||| |||||||||||| |||||| |||||||||||||| |||  ||||||||||||||||| |||||    
T  39435084 gttttgctagaagacaccttttatgaaagtgtcttttaacaagttttcctatagacatttgttaaaatacactaactaatttttatgaagatgtct 39434989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 574 - 669
Target Start/End: Original strand, 42090415 - 42090510
Alignment:
Q  574 gttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||| |||||||||||||||||| |||| ||||| ||| |||| ||||  ||||||||||||||||| ||||||||||||||||||||||||    
T  42090415 gttttgctggaagacaccttttatgaaagtgtcttttagcaaattattctatgaacatttgttaaaagacaccaactaatttttatgaaggtgtct 42090510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 572 - 669
Target Start/End: Complemental strand, 9548365 - 9548268
Alignment:
Q  572 gggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||||||  |||||| ||||||||||||||| ||||| |||||||| ||||   |||||| ||||||||| ||||||||||||||||||||||||    
T  9548365 gggttttgctataagacatcttttatgaaggtgtcttttagcaagttattctatgagcatttgctaaaagacaccaactaatttttatgaaggtgtct 9548268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 572 - 669
Target Start/End: Complemental strand, 16719882 - 16719785
Alignment:
Q  572 gggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||||| ||||||||||||||||||||||| ||||| | |||||| | ||  | |||||||||||||||  |||||||||||||||||||||||    
T  16719882 gggttttgctagaagacaccttttatgaaggtgtcttttagctagttattccatgaatatttgttaaaagacacaaactaatttttatgaaggtgtct 16719785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 574 - 669
Target Start/End: Original strand, 4206430 - 4206528
Alignment:
Q  574 gttttgcttgaagacaccttttatgaaggtgtattttaacaagtta---tcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||| |||||||| |||||||||||||| ||||| |||||||   ||||||||||||||| ||| ||| | ||||||||||||||||| ||||||    
T  4206430 gttttgctagaagacacattttatgaaggtgtcttttagcaagttatcctcctattgacatttgctaacagaaaccaactaatttttatgaatgtgtct 4206528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 574 - 669
Target Start/End: Complemental strand, 12725870 - 12725775
Alignment:
Q  574 gttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||| ||||||||||||||| ||| ||| ||||| |||||||| ||||   |||||  ||||||||| ||||||||||||||||||||||||    
T  12725870 gttttgctagaagacaccttttataaagatgtcttttagcaagttattctatgagcatttactaaaagacaccaactaatttttatgaaggtgtct 12725775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 574 - 669
Target Start/End: Complemental strand, 39961691 - 39961596
Alignment:
Q  574 gttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||| ||||| || |||||||||||||| |||||||||||||||  || |||||||||||||||| |  |||||||||| | ||||||||||    
T  39961691 gttttgctagaagatacattttatgaaggtgtcttttaacaagttatctcatagacatttgttaaaagatacaaactaattttcacgaaggtgtct 39961596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 583 - 669
Target Start/End: Complemental strand, 2969792 - 2969706
Alignment:
Q  583 gaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||||||| |||  | |||| |||||| || |||| ||||||||||||||||||||| | ||||||||||||||||||||||||    
T  2969792 gaagacaccttctatacatgtgtcttttaaaaaattattctattgacatttgttaaaagataccaactaatttttatgaaggtgtct 2969706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 575 - 669
Target Start/End: Complemental strand, 10664843 - 10664749
Alignment:
Q  575 ttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||  ||||||| |||||||||||||| ||||| |||||||| ||||   |||||| ||||||||| ||||||||||||||||||| ||||    
T  10664843 ttttgctataagacacattttatgaaggtgtcttttagcaagttattctatgagcatttgctaaaagacaccaactaatttttatgaaggcgtct 10664749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 572 - 669
Target Start/End: Original strand, 24314213 - 24314310
Alignment:
Q  572 gggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||||||  || ||||||||||| ||||||| ||||| ||| ||||  |||   |||||||||||||||| ||||||||||||||||||||||||    
T  24314213 gggttttgctaaaatacaccttttataaaggtgtcttttagcaaattattttatgagcatttgttaaaagacaccaactaatttttatgaaggtgtct 24314310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 583 - 667
Target Start/End: Complemental strand, 44539988 - 44539903
Alignment:
Q  583 gaagacaccttttatgaaggtgtattttaacaagttatcct-attgacatttgttaaaagacagcaactaatttttatgaaggtgt 667  Q
    ||||||| |||||||||||||||  |||| |||||||| || |||| |||||||||||||| | ||||||||||||||||||||||    
T  44539988 gaagacatcttttatgaaggtgtcatttagcaagttattcttattggcatttgttaaaagataccaactaatttttatgaaggtgt 44539903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 573 - 653
Target Start/End: Complemental strand, 25810559 - 25810479
Alignment:
Q  573 ggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaat 653  Q
    ||||||||| ||||| ||||||||||||||||| ||||| ||||||||  ||||  |||||||||||||||| ||||||||    
T  25810559 ggttttgctagaagataccttttatgaaggtgttttttagcaagttattatattatcatttgttaaaagacaccaactaat 25810479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 584 - 669
Target Start/End: Original strand, 21950650 - 21950735
Alignment:
Q  584 aagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||| ||||||||||||||| ||||| |||||||| ||||   |||||||||||| ||| |||||||| |||||||| ||||||    
T  21950650 aagacatcttttatgaaggtgtcttttagcaagttattctatgagcatttgttaaaaaacaccaactaatatttatgaatgtgtct 21950735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 573 - 667
Target Start/End: Original strand, 25880575 - 25880673
Alignment:
Q  573 ggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgac----atttgttaaaagacagcaactaatttttatgaaggtgt 667  Q
    ||||||||| |||||||| |||||||||||||| ||||| ||||||||| |||  ||    ||||| ||||||  | ||||||||||||||||||||||    
T  25880575 ggttttgctagaagacactttttatgaaggtgttttttagcaagttatcatataaacatttatttgctaaaagctatcaactaatttttatgaaggtgt 25880673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 629 - 669
Target Start/End: Original strand, 12895384 - 12895424
Alignment:
Q  629 catttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  12895384 catttgttaaaagacaccaactaatttttatgaaggtgtct 12895424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 572 - 611
Target Start/End: Original strand, 10862575 - 10862614
Alignment:
Q  572 gggttttgcttgaagacaccttttatgaaggtgtatttta 611  Q
    |||||||||| ||||||||||||||||||||||| |||||    
T  10862575 gggttttgctagaagacaccttttatgaaggtgtctttta 10862614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 572 - 605
Target Start/End: Original strand, 27097032 - 27097065
Alignment:
Q  572 gggttttgcttgaagacaccttttatgaaggtgt 605  Q
    |||||||||| |||||||||||||||||||||||    
T  27097032 gggttttgctagaagacaccttttatgaaggtgt 27097065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 570 - 669
Target Start/End: Complemental strand, 34125702 - 34125606
Alignment:
Q  570 tagggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||||| | |||| |||| ||||||   |||| ||||| ||||||||| ||| | |||||||||||  ||| ||| ||||||||||||| ||||||    
T  34125702 tagggttttgttagaagtcaccctttatg---gtgtcttttagcaagttatcatataggcatttgttaaattacaccaagtaatttttatgaatgtgtct 34125606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 8e-29; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 572 - 669
Target Start/End: Original strand, 23204375 - 23204472
Alignment:
Q  572 gggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||||| ||||||| ||||||||||||||| |||||||||||||| ||||   |||||||||||||||| ||||||||||||||||||||||||    
T  23204375 gggttttgctagaagacatcttttatgaaggtgtcttttaacaagttattctatgagcatttgttaaaagacatcaactaatttttatgaaggtgtct 23204472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 572 - 669
Target Start/End: Complemental strand, 16273725 - 16273628
Alignment:
Q  572 gggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||||| ||||||||| ||||||||||||| ||||| ||||||||| ||| |||||||| |||||||||  |||||||||||||||||||||||    
T  16273725 gggttttgctagaagacaccctttatgaaggtgtcttttagcaagttatcttatagacatttgctaaaagacacaaactaatttttatgaaggtgtct 16273628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 573 - 669
Target Start/End: Complemental strand, 19323859 - 19323763
Alignment:
Q  573 ggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||||| ||||||||||||||||||||||| ||||| ||||||||||| ||  |||||||||||||||| ||| ||||||||||||| ||||||    
T  19323859 ggttttgctagaagacaccttttatgaaggtgtcttttagcaagttatccttttagcatttgttaaaagacaccaattaatttttatgaaagtgtct 19323763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 571 - 669
Target Start/End: Complemental strand, 16994300 - 16994202
Alignment:
Q  571 agggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||||||| |||||||| ||||||||||||||  |||| |||||||| ||||   |||||||||||||||| |||||||||||||||||| |||||    
T  16994300 agggttttgctagaagacacattttatgaaggtgttgtttagcaagttattctatgagcatttgttaaaagacaccaactaatttttatgaagatgtct 16994202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 575 - 669
Target Start/End: Original strand, 20269235 - 20269329
Alignment:
Q  575 ttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||| ||||||| ||||||||||||||| ||||| |||||||| ||||  ||||||| ||||||||| ||| ||||||||||||||||||||    
T  20269235 ttttgctagaagacagcttttatgaaggtgtcttttagcaagttattctatgaacatttgctaaaagacaacaattaatttttatgaaggtgtct 20269329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 583 - 669
Target Start/End: Complemental strand, 31042672 - 31042586
Alignment:
Q  583 gaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||||| ||||||||||||||||||| ||||||||| ||| | |||||||||||||||| |||||||||||||| || ||||||    
T  31042672 gaagacaccctttatgaaggtgtattttagcaagttatcttataggcatttgttaaaagacaccaactaatttttattaaagtgtct 31042586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 572 - 669
Target Start/End: Complemental strand, 37172552 - 37172455
Alignment:
Q  572 gggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||| ||| |||| |||||||||||||||||| |||||||||||||| |||    |||||| ||||||||| ||||||||||||||||||||||||    
T  37172552 gggtttggctagaagtcaccttttatgaaggtgtcttttaacaagttattctacgagcatttgctaaaagacaccaactaatttttatgaaggtgtct 37172455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 571 - 667
Target Start/End: Original strand, 9741723 - 9741819
Alignment:
Q  571 agggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgt 667  Q
    ||||||||||| |||||||| |||||||||||||| ||||||||| |||| ||||   |||||| ||||| ||| ||||||||||||||||||||||    
T  9741723 agggttttgctagaagacacattttatgaaggtgtcttttaacaaattattctatgagcatttgctaaaaaacaccaactaatttttatgaaggtgt 9741819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 571 - 669
Target Start/End: Complemental strand, 13960538 - 13960441
Alignment:
Q  571 agggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||| ||| |||||||| |||||||||||||| ||||| ||||||||||||| | | |||| ||||||||| || |||||||||||||||||||||    
T  13960538 agggtttcgctagaagacactttttatgaaggtgtcttttagcaagttatcctataggcctttgctaaaagaca-cagctaatttttatgaaggtgtct 13960441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 572 - 669
Target Start/End: Complemental strand, 28038364 - 28038267
Alignment:
Q  572 gggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||||| |||||||| ||||||||| |||| ||||| |||||||| ||||   |||||| ||||| ||| ||||||||||||||||||||||||    
T  28038364 gggttttgctagaagacacattttatgaaagtgtcttttagcaagttattctatgagcatttgctaaaacacaccaactaatttttatgaaggtgtct 28038267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 572 - 669
Target Start/End: Complemental strand, 31056532 - 31056435
Alignment:
Q  572 gggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||||| | ||| | |||||   |||||||| |||||||||||||| || ||||||    
T  31056532 gggttttgctagaagacaccttttatgaaggtgtattttagcaagttaacttataggcatttccgaaaagacaccaactaatttttattaaagtgtct 31056435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 572 - 667
Target Start/End: Original strand, 18015642 - 18015736
Alignment:
Q  572 gggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgt 667  Q
    |||||||||| || |||||||| ||||||||||| ||||| ||||||||   ||  ||||||||||||||||| ||||||||||||||||||||||    
T  18015642 gggttttgctaga-gacaccttatatgaaggtgtcttttagcaagttattgcatgaacatttgttaaaagacaccaactaatttttatgaaggtgt 18015736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 574 - 669
Target Start/End: Original strand, 27365716 - 27365811
Alignment:
Q  574 gttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||| ||||||||||||||||||||||| ||||| |||||||| ||||   |||||||||||||||| || |||  |||||| |||||||||    
T  27365716 gttttgctagaagacaccttttatgaaggtgtcttttagcaagttattctatgagcatttgttaaaagacaccacctaggttttataaaggtgtct 27365811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 570 - 642
Target Start/End: Complemental strand, 21913908 - 21913836
Alignment:
Q  570 tagggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaaga 642  Q
    |||||||||||| ||||||||| ||||||||||||| ||||| ||||||||||||| | |||||| |||||||    
T  21913908 tagggttttgctagaagacaccctttatgaaggtgtcttttagcaagttatcctataggcatttgctaaaaga 21913836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 573 - 669
Target Start/End: Complemental strand, 38758779 - 38758684
Alignment:
Q  573 ggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||||| |||||||| |||||||||||||| ||||| |||||||| ||| |||   ||| ||||||||| ||||| |||||||| |||||||||    
T  38758779 ggttttgctagaagacacattttatgaaggtgtcttttagcaagttattcta-tgagcattgctaaaagacaccaactgatttttataaaggtgtct 38758684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 629 - 669
Target Start/End: Complemental strand, 26730407 - 26730367
Alignment:
Q  629 catttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  26730407 catttgttaaaagacaccaactaatttttatgaaggtgtct 26730367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 595 - 669
Target Start/End: Complemental strand, 38293616 - 38293541
Alignment:
Q  595 tatgaaggtgtattttaacaagttatcctattgacatttg-ttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||||||| |||||||||||||| ||||   |||||  |||||||||| ||||||||||||||||| ||||||    
T  38293616 tatgaaggtgtcttttaacaagttattctatgagcattttattaaaagacaccaactaatttttatgaacgtgtct 38293541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 569 - 625
Target Start/End: Complemental strand, 33429305 - 33429249
Alignment:
Q  569 ttagggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctat 625  Q
    ||||||||||||| |||||||| |||||||||||||  ||||| |||||||| ||||    
T  33429305 ttagggttttgctagaagacacattttatgaaggtgccttttagcaagttattctat 33429249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 570 - 669
Target Start/End: Complemental strand, 17689500 - 17689402
Alignment:
Q  570 tagggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||||| | |||||||| |||||| ||| ||| |||||  | ||||| ||||   |||||| ||||||||| || |||||||||||||||||||||    
T  17689500 tagggttttgttagaagacacattttataaagatgtcttttagtaggttattctatgagcatttgctaaaagacacca-ctaatttttatgaaggtgtct 17689402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 572 - 619
Target Start/End: Complemental strand, 19863206 - 19863159
Alignment:
Q  572 gggttttgcttgaagacaccttttatgaaggtgtattttaacaagtta 619  Q
    |||||||||| |||||||| |||| ||||||||| |||||||||||||    
T  19863206 gggttttgctggaagacactttttgtgaaggtgtcttttaacaagtta 19863159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 607 - 669
Target Start/End: Complemental strand, 19325163 - 19325101
Alignment:
Q  607 ttttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||| |||||||| ||||   |||||| ||||||| | ||||||||||||||||||||||||    
T  19325163 ttttagcaagttattctatgagcatttgctaaaagaaaccaactaatttttatgaaggtgtct 19325101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 570 - 620
Target Start/End: Complemental strand, 23129697 - 23129647
Alignment:
Q  570 tagggttttgcttgaagacaccttttatgaaggtgtattttaacaagttat 620  Q
    |||||||||| | ||| |||| |||||||||||||| ||||||||||||||    
T  23129697 tagggttttgttagaatacacattttatgaaggtgtcttttaacaagttat 23129647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 573 - 669
Target Start/End: Complemental strand, 28813218 - 28813121
Alignment:
Q  573 ggttttgcttgaagacaccttt-tatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||||  ||||||| ||| ||||||| ||| ||||| |||| ||| ||||   |||||| ||||||||| |||||||||||||| |||| ||||    
T  28813218 ggttttgctaaaagacacatttgtatgaagatgttttttagcaagatattctatgatcatttgctaaaagacaccaactaatttttataaaggcgtct 28813121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 585 - 669
Target Start/End: Original strand, 15978814 - 15978898
Alignment:
Q  585 agacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||| |||||||||||||| ||||| ||| |||  ||||    ||||| ||||||||| |||||||||||||| || ||||||    
T  15978814 agacacattttatgaaggtgtcttttagcaaattaatctatgagtatttgctaaaagacaccaactaatttttataaaagtgtct 15978898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 1e-27; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 570 - 669
Target Start/End: Original strand, 9891369 - 9891468
Alignment:
Q  570 tagggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||||||| ||||| ||||||||| ||||||| ||||| ||| ||||||||||| |||||||||||||||| ||||||||||||||||| ||||||    
T  9891369 tagggttttgctagaagataccttttataaaggtgtcttttagcaaattatcctattgtcatttgttaaaagacaccaactaatttttatgaatgtgtct 9891468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 575 - 669
Target Start/End: Original strand, 10074994 - 10075088
Alignment:
Q  575 ttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||| |||||||||||||||||| |||| ||||||||||||||  |||  | ||||||||||||||| ||||||||||||||||||||||||    
T  10074994 ttttgctagaagacaccttttatgaaagtgtcttttaacaagttattttatgaatatttgttaaaagacaccaactaatttttatgaaggtgtct 10075088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 583 - 669
Target Start/End: Complemental strand, 12159595 - 12159509
Alignment:
Q  583 gaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||||||||||||||||||| ||||| ||||||||  ||||  ||||||||| |||||| ||||||||||||||||||||||||    
T  12159595 gaagacaccttttatgaaggtgtcttttagcaagttattatattagcatttgttagaagacaccaactaatttttatgaaggtgtct 12159509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 572 - 669
Target Start/End: Original strand, 6322488 - 6322585
Alignment:
Q  572 gggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||||| ||||||| ||||||||| ||||| |||||||||||||| |||||  |||||||||||| |||  || ||||||||||||||||||||    
T  6322488 gggttttgctagaagacatcttttatgagggtgttttttaacaagttattctattagcatttgttaaaaaacacaaattaatttttatgaaggtgtct 6322585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 576 - 669
Target Start/End: Complemental strand, 17347200 - 17347107
Alignment:
Q  576 tttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||| |||||||| |||||||||||||| ||||| ||||||||  ||||  |||||||||||||||| |||||||||||||||||| |||||    
T  17347200 tttgctagaagacacattttatgaaggtgtcttttagcaagttattatattagcatttgttaaaagacaccaactaatttttatgaagatgtct 17347107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 573 - 665
Target Start/End: Original strand, 18096330 - 18096422
Alignment:
Q  573 ggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggt 665  Q
    ||||||||| ||||||| ||||| ||||||||| ||||| |||||||| ||||   |||||||||||||||| ||||||||||||||||||||    
T  18096330 ggttttgctagaagacatcttttgtgaaggtgtcttttagcaagttattctatgagcatttgttaaaagacaccaactaatttttatgaaggt 18096422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 573 - 665
Target Start/End: Original strand, 18102450 - 18102542
Alignment:
Q  573 ggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggt 665  Q
    ||||||||| ||||| | |||||  |||||||| ||||| |||||||| ||||   |||||||||||||||| ||||||||||||||||||||    
T  18102450 ggttttgctagaagatatcttttgcgaaggtgttttttagcaagttattctatgagcatttgttaaaagacaccaactaatttttatgaaggt 18102542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 591 - 669
Target Start/End: Original strand, 15081138 - 15081216
Alignment:
Q  591 cttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||||||||||| ||||| |||||||| ||||   |||||||||||||||| ||| ||||| ||||||||||||||    
T  15081138 cttttatgaaggtgtcttttagcaagttattctatgagcatttgttaaaagacaccaattaattgttatgaaggtgtct 15081216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 585 - 669
Target Start/End: Original strand, 9533376 - 9533464
Alignment:
Q  585 agacaccttttatgaaggtgtattttaacaagttatcctat---tga-catttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||||| |||||| ||| |||||  ||||||| ||||   ||| ||||||||||||||||  ||| |||||||||||||||||||    
T  9533376 agacacctttaatgaagatgtcttttagtaagttattctatatatgagcatttgttaaaagacactaacaaatttttatgaaggtgtct 9533464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 629 - 667
Target Start/End: Complemental strand, 19104381 - 19104343
Alignment:
Q  629 catttgttaaaagacagcaactaatttttatgaaggtgt 667  Q
    |||||||||||||||| ||||||||||||| ||||||||    
T  19104381 catttgttaaaagacaccaactaatttttacgaaggtgt 19104343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 574 - 652
Target Start/End: Complemental strand, 30416539 - 30416461
Alignment:
Q  574 gttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaa 652  Q
    |||||||| ||||| ||  ||||||||||||  |||||||||||| |||||| |  ||||| ||||||||| |||||||    
T  30416539 gttttgctagaagatactctttatgaaggtgctttttaacaagttgtcctataggtatttgctaaaagacaccaactaa 30416461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 630 - 667
Target Start/End: Original strand, 7190660 - 7190697
Alignment:
Q  630 atttgttaaaagacagcaactaatttttatgaaggtgt 667  Q
    |||| |||||||||| ||||||||||||||||||||||    
T  7190660 atttattaaaagacaccaactaatttttatgaaggtgt 7190697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 61; Significance: 8e-26; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 573 - 669
Target Start/End: Complemental strand, 231286 - 231190
Alignment:
Q  573 ggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||||| |||||||| |||||||||||||| ||||||||| |||| ||||  ||||||||||||||| | ||||||||||||||||||||||||    
T  231286 ggttttgctagaagacacattttatgaaggtgtcttttaacaaattattctatgaacatttgttaaaagataccaactaatttttatgaaggtgtct 231190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 583 - 669
Target Start/End: Original strand, 478319 - 478405
Alignment:
Q  583 gaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||| |||||||||||||| ||||| |||||||| ||||  ||||||||||||||||| ||||||||||||||||||||||||    
T  478319 gaagacactttttatgaaggtgttttttagcaagttattctatgaacatttgttaaaagacaccaactaatttttatgaaggtgtct 478405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 630 - 669
Target Start/End: Complemental strand, 94909 - 94870
Alignment:
Q  630 atttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  94909 atttgttaaaagacaccaactaatttttatgaaggtgtct 94870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 56; Significance: 7e-23; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 570 - 669
Target Start/End: Original strand, 392402 - 392501
Alignment:
Q  570 tagggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    |||||||||||| ||||||||||||||||||| ||| ||||| |||||||| ||||   |||||| ||||||||| ||||||||| ||||||||||||||    
T  392402 tagggttttgctagaagacaccttttatgaagatgtcttttagcaagttattctatgagcatttgctaaaagacaccaactaattattatgaaggtgtct 392501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 571 - 669
Target Start/End: Original strand, 35051 - 35149
Alignment:
Q  571 agggttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||||||||| ||||||||||||||||||||||| ||||| |||||||| ||||   |||||| ||| ||||| | ||||||||||||||||||||||    
T  35051 agggttttgctagaagacaccttttatgaaggtgtcttttagcaagttattctatgagcatttgctaagagacaccgactaatttttatgaaggtgtct 35149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 577 - 667
Target Start/End: Complemental strand, 103399 - 103309
Alignment:
Q  577 ttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgt 667  Q
    ||||| ||||||||| ||||||||||||| |||||  |||||||| ||| |||||||| ||||||||| ||||||| ||||||||||||||    
T  103399 ttgctagaagacaccctttatgaaggtgttttttagtaagttatcttatagacatttgctaaaagacaccaactaacttttatgaaggtgt 103309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 577 - 669
Target Start/End: Original strand, 9155 - 9246
Alignment:
Q  577 ttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgtct 669  Q
    ||||| ||||||||||||||||||||||||||||| |||||||| ||||   |||||| ||||||| | ||||||| ||||||||||||||||    
T  9155 ttgctagaagacaccttttatgaaggtgtattttagcaagttattctatgagcatttgctaaaagataccaactaa-ttttatgaaggtgtct 9246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 574 - 662
Target Start/End: Complemental strand, 121789 - 121701
Alignment:
Q  574 gttttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaa 662  Q
    ||||||||  || |||| |||||||||||||| |||||||||||||| ||||   |||||| ||||||||| ||| |||||||||||||    
T  121789 gttttgctataaaacacattttatgaaggtgtcttttaacaagttattctatgagcatttgctaaaagacaccaattaatttttatgaa 121701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 584 - 667
Target Start/End: Original strand, 17796 - 17879
Alignment:
Q  584 aagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaatttttatgaaggtgt 667  Q
    |||||||||||||||||  ||| |||||  || |||  | ||| ||||||||||||||||| ||||||||||||||||||||||    
T  17796 aagacaccttttatgaatatgttttttagtaatttactcaattaacatttgttaaaagacatcaactaatttttatgaaggtgt 17879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 576 - 652
Target Start/End: Original strand, 77027 - 77103
Alignment:
Q  576 tttgcttgaagacaccttttatgaaggtgtattttaacaagttatcctattgacatttgttaaaagacagcaactaa 652  Q
    |||||| ||||||||  ||||||||||||| ||||| |||||||| || |  ||||||| ||||||||| |||||||    
T  77027 tttgctagaagacactatttatgaaggtgttttttagcaagttattctgtaaacatttgctaaaagacaccaactaa 77103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 629 - 667
Target Start/End: Original strand, 3773 - 3811
Alignment:
Q  629 catttgttaaaagacagcaactaatttttatgaaggtgt 667  Q
    |||||||||| ||||| ||||||||||||||||||||||    
T  3773 catttgttaatagacaccaactaatttttatgaaggtgt 3811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University