View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12965_low_21 (Length: 356)

Name: NF12965_low_21
Description: NF12965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12965_low_21
NF12965_low_21
[»] chr1 (1 HSPs)
chr1 (15-356)||(7665059-7665400)


Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 15 - 356
Target Start/End: Original strand, 7665059 - 7665400
Alignment:
Q  15 gcacattgagagaagggtgggtgagtaaccgtttgaagaaaatttacccaaagtgggaccactttgtgagaaagtaaggggtatatgaggaaagagaaga 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7665059 gcacattgagagaagggtgggtgagtaaccgtttgaagaaaatttacccaaggtgggaccactttgtgagaaagtaaggggtatatgaggaaagagaaga 7665158  T
Q  115 atcaaatagtggtgtgcaatatgttgtgatttcatcattctcttctattgactagtctattgaagaaagaggcatttgcatggactgaagatgctcaaac 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  7665159 atcaaatagtggtgtgcaatatgttgtgatttcatcattctcttctattgactaatctattgaagaaagaggcatttgcatggactgaagatgctcaaac 7665258  T
Q  215 aacttttgttaaattgaagcatgtcttaagtcttaactacaacccctgtacttaatcttcctgatttttcactaccattcgtgttagaaacagatgcctc 314  Q
    | |||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7665259 agcttttgataaattgaagcaggtcctaagtcttaactacaacccctgtacttaatcttcctgatttttcactaccattcgtgttagaaacagatgcctc 7665358  T
Q  315 ggggactggtgtgggggtggtgttgagtcaagggggtcaccc 356  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  7665359 ggggactggtgtgggggtggtgttgagtcaagggggtcaccc 7665400  T

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