View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12965_low_23 (Length: 303)
Name: NF12965_low_23
Description: NF12965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12965_low_23 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 12 - 288
Target Start/End: Original strand, 48585119 - 48585395
Alignment:
| Q |
12 |
catcatcattgctcttggcgaaatcaccatgaatgttgcttgctccttttgcatttggatttttaaatgaaggaccaacagttcttatggggattgattt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48585119 |
catcatcattgctcttggcgaaatcaccatgaatgttgcttgctccttttgcatttggatttttaaatgaaggaccaacagttcttatggggattgattt |
48585218 |
T |
|
| Q |
112 |
tttggaaagataatctatgaattcatgctctagttcttcataggtatccactaatacacaaaacactttagacaagtccttaaactcttctaagacgagt |
211 |
Q |
| |
|
||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
48585219 |
tttcgaaatataatctatgaattcatgctctagttcttcataggtatccactaatacacaaaacactttagataagtccttaaactcttctaagacaagt |
48585318 |
T |
|
| Q |
212 |
ttacctaggaatggaaatggacaaaaaggatgcacaagatctgagatttcattgtatttaagaactctagaagggat |
288 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48585319 |
ttacctaggaatggaaatgaacaaaaaggatgcacaagatctgagatttcattgtatttaagaactctagaagggat |
48585395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 60 - 284
Target Start/End: Original strand, 48639740 - 48639964
Alignment:
| Q |
60 |
ttgcatttggatttttaaatgaaggaccaacagttcttatggggattgattttttggaaagataatctatgaattcatgctctagttcttcataggtatc |
159 |
Q |
| |
|
||||||||||||| ||||| |||||||||| || |||||||| |||||||||||| |||| |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
48639740 |
ttgcatttggattcttaaacgaaggaccaataggtcttatggtgattgatttttttgaaatataatctatgaaatcatgctctagttcttcataggtatc |
48639839 |
T |
|
| Q |
160 |
cactaatacacaaaacactttagacaagtccttaaactcttctaagacgagtttacctaggaatggaaatggacaaaaaggatgcacaagatctgagatt |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||| | || ||||||||| |
|
|
| T |
48639840 |
cactaatacacaaaacactttagacaagtccttaaactcttctaagatgagtttacctagaaatggaaatgggaaaaaaggatgtataaagtctgagatt |
48639939 |
T |
|
| Q |
260 |
tcattgtatttaagaactctagaag |
284 |
Q |
| |
|
|||||||||||||||||| |||||| |
|
|
| T |
48639940 |
tcattgtatttaagaactatagaag |
48639964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 13 - 284
Target Start/End: Original strand, 48666937 - 48667211
Alignment:
| Q |
13 |
atcatcattgctcttggcgaaatcaccatgaat---gttgcttgctccttttgcatttggatttttaaatgaaggaccaacagttcttatggggattgat |
109 |
Q |
| |
|
||||||||||||||| | |||||||||| | || |||||||||||| ||||| |||||||||||||| |||||||||| | |||||||| ||||||| |
|
|
| T |
48666937 |
atcatcattgctcttagtgaaatcaccaagtatattgttgcttgctccgtttgcctttggatttttaaacaaaggaccaacgggtcttatggcgattgat |
48667036 |
T |
|
| Q |
110 |
tttttggaaagataatctatgaattcatgctctagttcttcataggtatccactaatacacaaaacactttagacaagtccttaaactcttctaagacga |
209 |
Q |
| |
|
|||| |||| |||||| ||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||| | || | | | || |
|
|
| T |
48667037 |
ttttccgaaatataatcgatgaaatcatgctctaattcttcaaaggtatccactaatacacaaaacactttagacatgtcctttatctgtgccgtggtga |
48667136 |
T |
|
| Q |
210 |
gtttacctaggaatggaaatggacaaaaaggatgcacaagatctgagatttcattgtatttaagaactctagaag |
284 |
Q |
| |
|
|| | ||||| | |||| || |||||||||||| | || ||||| |||||||||||||||||||||| |||||| |
|
|
| T |
48667137 |
gtgtccctagaattggatatctacaaaaaggatgtataaaatctgggatttcattgtatttaagaactatagaag |
48667211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 13 - 192
Target Start/End: Original strand, 48661342 - 48661524
Alignment:
| Q |
13 |
atcatcattgctcttggcgaaatcaccatgaat---gttgcttgctccttttgcatttggatttttaaatgaaggaccaacagttcttatggggattgat |
109 |
Q |
| |
|
||||||||| ||||| | |||||||||| || | |||||||||||| ||||| |||||||| ||||| ||||||||||| |||||||| ||||||| |
|
|
| T |
48661342 |
atcatcattactcttagtgaaatcaccaagagtattgttgcttgctccatttgcctttggattcttaaacaaaggaccaacatgtcttatggtgattgat |
48661441 |
T |
|
| Q |
110 |
tttttggaaagataatctatgaattcatgctctagttcttcataggtatccactaatacacaaaacactttagacaagtcctt |
192 |
Q |
| |
|
||||| |||| |||||| ||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
48661442 |
ttttttgaaatataatcgatgaaatcatgctctaattcttcaaaggtatccactaatacacaaaacactttagacatgtcctt |
48661524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 64 - 273
Target Start/End: Original strand, 11547078 - 11547287
Alignment:
| Q |
64 |
atttggatttttaaatgaaggaccaacagttcttatggggattgattttttggaaagataatctatgaattcatgctctagttcttcataggtatccact |
163 |
Q |
| |
|
||||||||||||||| | ||||||| || ||||||| |||| |||||||| | || ||| || ||||| ||||| ||||||||||||||||| || ||| |
|
|
| T |
11547078 |
atttggatttttaaacaatggaccaataggtcttatgtggatggatttttttgtaatatagtcaatgaaatcatgttctagttcttcataggtttctact |
11547177 |
T |
|
| Q |
164 |
aatacacaaaacactttagacaagtccttaaactcttctaagacgagtttacctaggaatggaaatggacaaaaaggatgcacaagatctgagatttcat |
263 |
Q |
| |
|
|| ||||||||||||||||| || | |||||||| |||||||| |||| | ||||| |||||| |||||| ||||||||| | || ||||| |||||||| |
|
|
| T |
11547178 |
aaaacacaaaacactttagataaattcttaaactgttctaagatgagtgtccctagaaatggatatggactaaaaggatgaagaaaatctgggatttcat |
11547277 |
T |
|
| Q |
264 |
tgtatttaag |
273 |
Q |
| |
|
|||||||||| |
|
|
| T |
11547278 |
tgtatttaag |
11547287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 104 - 277
Target Start/End: Complemental strand, 48618448 - 48618275
Alignment:
| Q |
104 |
attgattttttggaaagataatctatgaattcatgctctagttcttcataggtatccactaatacacaaaacactttagacaagtccttaaactcttcta |
203 |
Q |
| |
|
|||| |||||| |||| ||| || ||||| ||||||||||||||||||||||| || ||||| |||||||| ||||||||||| | |||||||| ||||| |
|
|
| T |
48618448 |
attgttttttttgaaatatagtcaatgaaatcatgctctagttcttcataggtttctactaaaacacaaaatactttagacaaattcttaaactgttcta |
48618349 |
T |
|
| Q |
204 |
agacgagtttacctaggaatggaaatggacaaaaaggatgcacaagatctgagatttcattgtatttaagaact |
277 |
Q |
| |
|
||| |||| | ||||| ||||||||| ||| ||||||||| | || ||||| |||||||||||||||||||||| |
|
|
| T |
48618348 |
agatgagtgtccctagaaatggaaattgactaaaaggatgaagaaaatctgggatttcattgtatttaagaact |
48618275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 94 - 277
Target Start/End: Original strand, 48652997 - 48653180
Alignment:
| Q |
94 |
tcttatggggattgattttttggaaagataatctatgaattcatgctctagttcttcataggtatccactaatacacaaaacactttagacaagtcctta |
193 |
Q |
| |
|
||||||| |||||||||| || |||| ||| || ||||| ||||||||||||||||||||||| || ||||| |||||||| |||||||| || | |||| |
|
|
| T |
48652997 |
tcttatgaggattgatttgtttgaaatatagtcaatgaaatcatgctctagttcttcataggtttctactaaaacacaaaatactttagataaattctta |
48653096 |
T |
|
| Q |
194 |
aactcttctaagacgagtttacctaggaatggaaatggacaaaaaggatgcacaagatctgagatttcattgtatttaagaact |
277 |
Q |
| |
|
| | ||||||||||||| | || | || |||||| || ||||||||||| || ||||| ||||||||| | |||||||||| |
|
|
| T |
48653097 |
atttgttctaagacgagtgtcccaaatgatagaaatgtactaaaaggatgcagaaaatctgggatttcattatgtttaagaact |
48653180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 106 - 188
Target Start/End: Original strand, 48628755 - 48628837
Alignment:
| Q |
106 |
tgattttttggaaagataatctatgaattcatgctctagttcttcataggtatccactaatacacaaaacactttagacaagt |
188 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||| | ||| ||||||| |
|
|
| T |
48628755 |
tgattttttggaaagataatcgatgaaatcatgctctagttcttcataggtatccgctaatacacaaaatattttggacaagt |
48628837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 94 - 186
Target Start/End: Original strand, 48656445 - 48656537
Alignment:
| Q |
94 |
tcttatggggattgattttttggaaagataatctatgaattcatgctctagttcttcataggtatccactaatacacaaaacactttagacaa |
186 |
Q |
| |
|
||||||| |||||| |||| |||| |||||| || || ||| ||||||||||||||||||||||||| |||||||| || |||||||||| |
|
|
| T |
48656445 |
tcttatgatgattgacttttccgaaatataatcgataaaatcaggctctagttcttcataggtatccacaaatacacacaatgctttagacaa |
48656537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 102 - 204
Target Start/End: Complemental strand, 19665806 - 19665704
Alignment:
| Q |
102 |
ggattgattttttggaaagataatctatgaattcatgctctagttcttcataggtatccactaatacacaaaacactttagacaagtccttaaactcttc |
201 |
Q |
| |
|
||||||||||||| |||| ||| || ||| | |||||||||||||| ||||| ||||||| |||||||||||||||||||| || | |||||||| ||| |
|
|
| T |
19665806 |
ggattgattttttcgaaatatagtcgatgtaatcatgctctagttcatcataactatccaccaatacacaaaacactttagataaattcttaaactgttc |
19665707 |
T |
|
| Q |
202 |
taa |
204 |
Q |
| |
|
||| |
|
|
| T |
19665706 |
taa |
19665704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 71 - 194
Target Start/End: Original strand, 27223830 - 27223953
Alignment:
| Q |
71 |
tttttaaatgaaggaccaacagttcttatggggattgattttttggaaagataatctatgaattcatgctctagttcttcataggtatccactaatacac |
170 |
Q |
| |
|
|||||||| ||||||||| || |||||| || ||| ||||| |||| ||| || ||||| ||||| |||||||| ||||| ||||| || ||||||| |
|
|
| T |
27223830 |
tttttaaacaaaggaccaataggtcttattttgactgaatttttagaaacatagtcgatgaaatcatgttctagttcctcatacgtatcaaccaatacac |
27223929 |
T |
|
| Q |
171 |
aaaacactttagacaagtccttaa |
194 |
Q |
| |
|
|||||||||||||||||| ||||| |
|
|
| T |
27223930 |
aaaacactttagacaagttcttaa |
27223953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 194
Target Start/End: Original strand, 27228066 - 27228144
Alignment:
| Q |
116 |
gaaagataatctatgaattcatgctctagttcttcataggtatccactaatacacaaaacactttagacaagtccttaa |
194 |
Q |
| |
|
|||| ||||| |||||| ||||| || | ||| |||||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
27228066 |
gaaatataatttatgaaatcatgttccaattcctcataggtatccaccaatacacaaaacactttagacaagttcttaa |
27228144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University