View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12965_low_24 (Length: 285)
Name: NF12965_low_24
Description: NF12965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12965_low_24 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 11 - 285
Target Start/End: Complemental strand, 3462745 - 3462471
Alignment:
| Q |
11 |
cagagagagcaactaactcatacatagacacagttcaagccgtaaccaccaatcaccttgtcagtgaatctggtgtggcggagtttgtttcagctatggc |
110 |
Q |
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| T |
3462745 |
cagagagagcaactaactcatacatagacacagttcaagccgtaaccaccaatcaccttgtcagtgaatctggtgtggcggagtttgtttcagctatggc |
3462646 |
T |
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| Q |
111 |
ggcaggatggaacgctcagcttatagtggaaacatggtcatgtggcggagttattccaacgagtgttggtttatccatagcaagcggtcacaatggtgga |
210 |
Q |
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| T |
3462645 |
ggcaggatggaacgctcagcttatagtggaaacatggtcatgtggcggagttattccaacgagtgttggtttatccatagcaagcggtcacaatggtgga |
3462546 |
T |
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| Q |
211 |
agacacgtgtgtatagttcctgatgaactctcaagatcagagtatgcaaaaaatatgttagaagctggtatgtca |
285 |
Q |
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| T |
3462545 |
agacacgtgtgtatagttcctgatgaactctcaagatcagagtatgcaaaaaatatgttagaagctggtatgtca |
3462471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 11 - 284
Target Start/End: Complemental strand, 3452726 - 3452450
Alignment:
| Q |
11 |
cagagagagcaactaactcatacatagacacagttcaagccgtaaccacca---atcaccttgtcagtgaatctggtgtggcggagtttgtttcagctat |
107 |
Q |
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||||||||||||| ||||||||||| |||||||||||||| ||||||||| |||||||| || ||||| |||| ||||||| | || || |||| |
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| T |
3452726 |
cagagagagcaacaaactcatacatcgacacagttcaagcgataaccaccatcaatcacctttctagcgaatccggtgcggcggagctggtatcctctat |
3452627 |
T |
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| Q |
108 |
ggcggcaggatggaacgctcagcttatagtggaaacatggtcatgtggcggagttattccaacgagtgttggtttatccatagcaagcggtcacaatggt |
207 |
Q |
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||| |||||||||||||||||||| ||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3452626 |
ggcagcaggatggaacgctcagctgatagtagaaacatggtcacacggcggagttatcccaacgagtgttggtttatccatagcaagcggtcacacaggt |
3452527 |
T |
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| Q |
208 |
ggaagacacgtgtgtatagttcctgatgaactctcaagatcagagtatgcaaaaaatatgttagaagctggtatgtc |
284 |
Q |
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|||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
3452526 |
ggaagacacgtgtgcatagttcctgatgaacaatcaagatcagagtatgcaaaaaacatgggagaagctggtatgtc |
3452450 |
T |
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