View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12965_low_26 (Length: 264)

Name: NF12965_low_26
Description: NF12965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12965_low_26
NF12965_low_26
[»] chr7 (4 HSPs)
chr7 (7-250)||(42135426-42135669)
chr7 (12-250)||(42156511-42156749)
chr7 (12-250)||(42144564-42144802)
chr7 (12-250)||(42175683-42175921)
[»] chr2 (3 HSPs)
chr2 (95-240)||(44225331-44225476)
chr2 (95-240)||(44236145-44236290)
chr2 (95-240)||(44213170-44213315)
[»] chr4 (4 HSPs)
chr4 (105-247)||(2900483-2900625)
chr4 (142-247)||(2874345-2874450)
chr4 (178-238)||(34144461-34144520)
chr4 (105-247)||(2884339-2884481)
[»] chr1 (3 HSPs)
chr1 (184-250)||(41690486-41690552)
chr1 (106-210)||(2163683-2163787)
chr1 (106-210)||(2151409-2151513)


Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 7 - 250
Target Start/End: Original strand, 42135426 - 42135669
Alignment:
Q  7 gtgagatgaatcaaaggaatcaacaaattcagaaactgaaacatatttataaggtttatctcttctaaaccaatattgttgttggtcttttttggatgtt 106  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42135426 gtgaaatgaatcaaaggaatcaacaaattcagaaactgaaacatatttataaggtttatctcttctaaaccaatattgttgttggtcttttttggatgtt 42135525  T
Q  107 acttcttgtaaaaagtcagctactccttttcttggaggacatttgaaaccgatggtttcaaaaaactctaacacattttcgcgtggtccttggtatacaa 206  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  42135526 acttcttgtaaaaaatcagctactccttttcttggaggacatttgaaaccgatggtttcaaaaaactgtaacacattttcgcgtggtccttggtatacaa 42135625  T
Q  207 tttgaccttctgaaagtaggataatgtcatcaaagagttcaaat 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  42135626 tttgaccttctgaaagtaggataatgtcatcaaagagttcaaat 42135669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 42156511 - 42156749
Alignment:
Q  12 atgaatcaaaggaatcaacaaattcagaaactgaaacatatttataaggtttatctcttctaaaccaatattgttgttggtcttttttggatgttacttc 111  Q
    |||||| |||| ||||||||||||||| ||||||||||||| ||||||||| |||| || ||||||| ||||||||||| ||||| ||||||||||||||    
T  42156511 atgaatgaaagaaatcaacaaattcaggaactgaaacatatctataaggttcatctattttaaaccagtattgttgttgatctttcttggatgttacttc 42156610  T
Q  112 ttgtaaaaagtcagctactccttttcttggaggacatttgaaaccgatggtttcaaaaaactctaacacattttcgcgtggtccttggtatacaatttga 211  Q
    |||||| || ||||| |  ||||||||   ||||||  | |||||  ||  |||||| |||||||  || || || ||||||||||| ||||||||||||    
T  42156611 ttgtaagaaatcagcaatcccttttctctcaggacacctaaaacctgtgtattcaaagaactctagtacgttctcacgtggtccttgatatacaatttga 42156710  T
Q  212 ccttctgaaagtaggataatgtcatcaaagagttcaaat 250  Q
    |||||||||||||| |||||||| |||||||||||||||    
T  42156711 ccttctgaaagtagaataatgtcgtcaaagagttcaaat 42156749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 42144564 - 42144802
Alignment:
Q  12 atgaatcaaaggaatcaacaaattcagaaactgaaacatatttataaggtttatctcttctaaaccaatattgttgttggtcttttttggatgttacttc 111  Q
    |||||| |||| ||||||||||||||| ||||||||||||| ||||||||| ||||||| ||||||| ||||||||||| ||||| ||||||||||||||    
T  42144564 atgaatgaaagaaatcaacaaattcaggaactgaaacatatctataaggttcatctcttttaaaccagtattgttgttgatctttcttggatgttacttc 42144663  T
Q  112 ttgtaaaaagtcagctactccttttcttggaggacatttgaaaccgatggtttcaaaaaactctaacacattttcgcgtggtccttggtatacaatttga 211  Q
    |||||| || ||||| || ||||||||    |||||  | || ||  ||  ||| || ||||||| ||||||||| || || ||||| ||||| ||||||    
T  42144664 ttgtaagaaatcagcaacaccttttctctctggacacctaaagcctgtgtattcgaagaactctagcacattttcacgcggaccttgatatactatttga 42144763  T
Q  212 ccttctgaaagtaggataatgtcatcaaagagttcaaat 250  Q
    ||||||||||| || |||||||| |||||||| ||||||    
T  42144764 ccttctgaaagaagaataatgtcgtcaaagaggtcaaat 42144802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 42175683 - 42175921
Alignment:
Q  12 atgaatcaaaggaatcaacaaattcagaaactgaaacatatttataaggtttatctcttctaaaccaatattgttgttggtcttttttggatgttacttc 111  Q
    |||||| |||| | |||| |||||||| ||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  42175683 atgaatgaaagaactcaaaaaattcaggaactgaaacatatctataaggttcatctcttctaaaccagtattgttgttggtctttcttggatgttacttc 42175782  T
Q  112 ttgtaaaaagtcagctactccttttcttggaggacatttgaaaccgatggtttcaaaaaactctaacacattttcgcgtggtccttggtatacaatttga 211  Q
    |||||| || ||||| || | ||||||    || ||  | || ||  ||  ||| || ||||||| ||||||||| || || ||||| ||||||||||||    
T  42175783 ttgtaagaaatcagcaacacattttctctctgggcacctaaagcccgtgtattcgaagaactctagcacattttcacgcggaccttgatatacaatttga 42175882  T
Q  212 ccttctgaaagtaggataatgtcatcaaagagttcaaat 250  Q
    |||||||||||||| |||||||| ||||| |||||||||    
T  42175883 ccttctgaaagtagaataatgtcgtcaaaaagttcaaat 42175921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 95 - 240
Target Start/End: Original strand, 44225331 - 44225476
Alignment:
Q  95 tttttggatgttacttcttgtaaaaagtcagctactccttttcttggaggacatttgaaaccgatggtttcaaaaaactctaacacattttcgcgtggtc 194  Q
    |||||||| ||||||||||| | |||||||||  | ||||| |||  ||||||||||||||| || ||||||||||| || |  |||| |||||| || |    
T  44225331 tttttggaagttacttcttgaagaaagtcagcagcacctttcctttcaggacatttgaaacccattgtttcaaaaaagtcaagaacatattcgcgggggc 44225430  T
Q  195 cttggtatacaatttgaccttctgaaagtaggataatgtcatcaaa 240  Q
    | |||||||||| ||| || || |||| || |||||||||||||||    
T  44225431 catggtatacaacttggccatcagaaattaagataatgtcatcaaa 44225476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 95 - 240
Target Start/End: Original strand, 44236145 - 44236290
Alignment:
Q  95 tttttggatgttacttcttgtaaaaagtcagctactccttttcttggaggacatttgaaaccgatggtttcaaaaaactctaacacattttcgcgtggtc 194  Q
    |||||||| ||||||||||| | |||||||||  | ||||| |||  ||||||||||||||| || ||||||||||| || |  |||| |||||| || |    
T  44236145 tttttggaagttacttcttgaagaaagtcagcggcacctttcctttcaggacatttgaaacccattgtttcaaaaaagtcaagaacatattcgcgggggc 44236244  T
Q  195 cttggtatacaatttgaccttctgaaagtaggataatgtcatcaaa 240  Q
    | |||||||||| ||| || || || | || |||||||||||||||    
T  44236245 catggtatacaacttggccatcagagattaagataatgtcatcaaa 44236290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 240
Target Start/End: Original strand, 44213170 - 44213315
Alignment:
Q  95 tttttggatgttacttcttgtaaaaagtcagctactccttttcttggaggacatttgaaaccgatggtttcaaaaaactctaacacattttcgcgtggtc 194  Q
    |||||||||||||||||||| | ||| ||||| || ||||| |||  ||||||||||||||| || | ||| ||||| || |  |||| |||||| || |    
T  44213170 tttttggatgttacttcttgaagaaaatcagcaacacctttcctttcaggacatttgaaacccatagattcgaaaaagtcaagaacatattcgcgggggc 44213269  T
Q  195 cttggtatacaatttgaccttctgaaagtaggataatgtcatcaaa 240  Q
    | |||||||||| ||| || || || | || |||||||||||||||    
T  44213270 catggtatacaacttggccatcagatattaagataatgtcatcaaa 44213315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 105 - 247
Target Start/End: Original strand, 2900483 - 2900625
Alignment:
Q  105 ttacttcttgtaaaaagtcagctactccttttcttggaggacatttgaaaccgatggtttcaaaaaactctaacacattttcgcgtggtccttggtatac 204  Q
    |||||||||| | |||||||||||| ||||| ||   ||||||||||||||| |  | ||||||||| || |  |||| ||| || |||||||| || ||    
T  2900483 ttacttcttgaagaaagtcagctacccctttcctctcaggacatttgaaaccaactgattcaaaaaagtcaagaacatgttcacgcggtccttgatagac 2900582  T
Q  205 aatttgaccttctgaaagtaggataatgtcatcaaagagttca 247  Q
    ||||||||| || || |  || |||||||||||||| ||||||    
T  2900583 aatttgaccatcggatataagaataatgtcatcaaaaagttca 2900625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 247
Target Start/End: Complemental strand, 2874450 - 2874345
Alignment:
Q  142 aggacatttgaaaccgatggtttcaaaaaactctaacacattttcgcgtggtccttggtatacaatttgaccttctgaaagtaggataatgtcatcaaag 241  Q
    ||||||||||||||| || | ||||||||| || |  |||||||| || ||||||||||| ||||||| ||| || || |  || ||||||||||||||     
T  2874450 aggacatttgaaaccaatagattcaaaaaattcaagaacattttcacgaggtccttggtaaacaatttcaccatcagataaaagaataatgtcatcaaaa 2874351  T
Q  242 agttca 247  Q
    ||||||    
T  2874350 agttca 2874345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 34144461 - 34144520
Alignment:
Q  178 cacattttcgcgtggtccttggtatacaatttgaccttctgaaagtaggataatgtcatca 238  Q
    |||||||||  |||| |||||| ||||||||||| ||||| ||||||||||||||||||||    
T  34144461 cacattttcatgtggaccttggaatacaatttgagcttct-aaagtaggataatgtcatca 34144520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 247
Target Start/End: Complemental strand, 2884481 - 2884339
Alignment:
Q  105 ttacttcttgtaaaaagtcagctactccttttcttggaggacatttgaaaccgatggtttcaaaaaactctaacacattttcgcgtggtccttggtatac 204  Q
    |||||||||| | |||||| ||| | ||||| ||   ||||||||||||||| |  | ||||||||| || |  | || |||||| ||||||||||| ||    
T  2884481 ttacttcttgaagaaagtccgctgcacctttcctctcaggacatttgaaaccaactgattcaaaaaattcaagaatatgttcgcgaggtccttggtagac 2884382  T
Q  205 aatttgaccttctgaaagtaggataatgtcatcaaagagttca 247  Q
    ||||||||| || || |  || |||||||||||||| ||||||    
T  2884381 aatttgaccatcagatataagaataatgtcatcaaaaagttca 2884339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 250
Target Start/End: Original strand, 41690486 - 41690552
Alignment:
Q  184 ttcgcgtggtccttggtatacaatttgaccttctgaaagtaggataatgtcatcaaagagttcaaat 250  Q
    |||||| || |||||||| ||||| |||||||||||||||| ||| ||||||||||| || ||||||    
T  41690486 ttcgcgaggaccttggtagacaatctgaccttctgaaagtaagattatgtcatcaaaaagatcaaat 41690552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 210
Target Start/End: Original strand, 2163683 - 2163787
Alignment:
Q  106 tacttcttgtaaaaagtcagctactccttttcttggaggacatttgaaaccgatggtttcaaaaaactctaacacattttcgcgtggtccttggtataca 205  Q
    |||||||||||| || ||||| ||||||||||||  |||||| ||||| || || |  || ||||||||||  |||||||| | ||||||||| || |||    
T  2163683 tacttcttgtaagaaatcagcaactccttttctttcaggacacttgaatcccattgactcgaaaaactctagtacattttctcttggtccttgatacaca 2163782  T
Q  206 atttg 210  Q
    |||||    
T  2163783 atttg 2163787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 210
Target Start/End: Original strand, 2151409 - 2151513
Alignment:
Q  106 tacttcttgtaaaaagtcagctactccttttcttggaggacatttgaaaccgatggtttcaaaaaactctaacacattttcgcgtggtccttggtataca 205  Q
    |||||||||||| || ||||| || |||||||||   ||||| ||||||||  | | ||||||||||||||  |||| ||| | ||||||||| || |||    
T  2151409 tacttcttgtaagaaatcagcaacgccttttctttcgggacacttgaaacctgtcgattcaaaaaactctagtacatattctcttggtccttgatacaca 2151508  T
Q  206 atttg 210  Q
    |||||    
T  2151509 atttg 2151513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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