View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12965_low_27 (Length: 248)
Name: NF12965_low_27
Description: NF12965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12965_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 230
Target Start/End: Complemental strand, 11640499 - 11640286
Alignment:
| Q |
17 |
aatatctacatttaaagttcaataattataagctgatttgtcaatcaagacgcaacctgcgactgaaactttgttccatgctcgaatgcatcctcattct |
116 |
Q |
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| T |
11640499 |
aatatctacatttaaagttcaataattataagctgatttgtcaatcaagacgcaacctgcaactgaaactttgttctatgctcgaatgcatcctcattct |
11640400 |
T |
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| Q |
117 |
ggctttctccttcttgatttggacaagcaaatggtaaacacaccatggaaagcttagaaaatggtccctttgcataccatcattgtacaaaccatagtaa |
216 |
Q |
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| T |
11640399 |
ggctttctccttcttgatttggacaagcaaatggtaaacacaccatggaaagcttagaaaatggtccctctgcataccttcattgtacaaaccatagtaa |
11640300 |
T |
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| Q |
217 |
ctatgatggtaagt |
230 |
Q |
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|||||||||||||| |
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| T |
11640299 |
ctatgatggtaagt |
11640286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 17 - 229
Target Start/End: Original strand, 11674904 - 11675116
Alignment:
| Q |
17 |
aatatctacatttaaagttcaataattataagctgatttgtcaatcaagacgcaacctgcgactgaaactttgttccatgctcgaatgcatcctcattct |
116 |
Q |
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||||||||||| |||||||||||| |||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
11674904 |
aatatctacatgcaaagttcaataactataagtagatttgtcagtcgagacgcaacctgcgactgaaactttgttccatgctcgaatgcatcctcatcct |
11675003 |
T |
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| Q |
117 |
ggctttctccttcttgatttggacaagcaaatggtaaacacaccatggaaagcttagaaaatggtccctttgcataccatcattgtacaaaccatagtaa |
216 |
Q |
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| T |
11675004 |
ggctttctccttcttgatttggacaagcagatggtaaacacaccatggaaagcttagaaaatggtcccttttcataccttcattgtacaaaccatagtaa |
11675103 |
T |
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| Q |
217 |
ctatgatggtaag |
229 |
Q |
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||||||||||||| |
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| T |
11675104 |
ctatgatggtaag |
11675116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 43 - 230
Target Start/End: Complemental strand, 11631711 - 11631524
Alignment:
| Q |
43 |
tataagctgatttgtcaatcaagacgcaacctgcgactgaaactttgttccatgctcgaatgcatcctcattctggctttctccttcttgatttggacaa |
142 |
Q |
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||||||| ||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||| ||||||||||||||||| |||||||||| |
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| T |
11631711 |
tataagcagatatgtcaatcaagacgcaacctgtgactgaaactttgttccattctcgaatgcatcttcatcctggctttctccttcttaatttggacaa |
11631612 |
T |
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| Q |
143 |
gcaaatggtaaacacaccatggaaagcttagaaaatggtccctttgcataccatcattgtacaaaccatagtaactatgatggtaagt |
230 |
Q |
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| T |
11631611 |
gcaaatggtaaacacaccatggaaagcttagaaaatggtccctctgcataccttcattgtacaaaccatagtaactatgatggtaagt |
11631524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 51 - 230
Target Start/End: Original strand, 11682425 - 11682604
Alignment:
| Q |
51 |
gatttgtcaatcaagacgcaacctgcgactgaaactttgttccatgctcgaatgcatcctcattctggctttctccttcttgatttggacaagcaaatgg |
150 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||| || ||| |||||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
11682425 |
gatttgtcagtcaagacgcaacctgcgactgaaactttgttccatcctagaaagcatcctcatcctgactttctccttcttgatttggacaagcaaatgg |
11682524 |
T |
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| Q |
151 |
taaacacaccatggaaagcttagaaaatggtccctttgcataccatcattgtacaaaccatagtaactatgatggtaagt |
230 |
Q |
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| T |
11682525 |
taaacacaccatggaaagcttagaaaatggtccctctgcataccttcattgtacaaaccatagtaactatgatggtaagt |
11682604 |
T |
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