View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12965_low_29 (Length: 238)
Name: NF12965_low_29
Description: NF12965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12965_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 49008405 - 49008185
Alignment:
| Q |
1 |
atctaatggctgctgggctccaacaagggtgcatttcttttaaaagtgctgctacacctgcaacgtgtggacatgacattgatgttccacttaacaagtt |
100 |
Q |
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| T |
49008405 |
atctaatggctgctgggctccaacaagggtgcatttcttttaaaagtgctgctacacctgcaacgtgtggacatgacattgatgttccacttaacaagtt |
49008306 |
T |
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| Q |
101 |
gaagttgttgaagagattgttctggaattgcagctctgttgctggaacattttgaggccatgaagctaagattagtgttcctggtgctgtgatgtctggt |
200 |
Q |
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| T |
49008305 |
gaagttgttgaagagattgttctggaattgcagctctgttgctggaacattttgaggccatgaagctaagattagtgttcctggtgctgtgatgtctggt |
49008206 |
T |
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| Q |
201 |
ttcaatacaaatggacaacta |
221 |
Q |
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||||||||||||||||||||| |
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| T |
49008205 |
ttcaatacaaatggacaacta |
49008185 |
T |
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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 37 - 114
Target Start/End: Original strand, 21687023 - 21687100
Alignment:
| Q |
37 |
cttttaaaagtgctgctacacctgcaacgtgtggacatgacattgatgttccacttaacaagttgaagttgttgaaga |
114 |
Q |
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| T |
21687023 |
cttttaaaagcgctgctacacctgcaacatgtggacatgacatagatgttccatctatcaaattgaagttgttaaaga |
21687100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 114
Target Start/End: Original strand, 8945860 - 8945937
Alignment:
| Q |
37 |
cttttaaaagtgctgctacacctgcaacgtgtggacatgacattgatgttccacttaacaagttgaagttgttgaaga |
114 |
Q |
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| T |
8945860 |
cttttaaaagtgctcctacaccggcaacatgaggacatgacgtagatgttccagttaaaaatttgaacttgttgaaga |
8945937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 114
Target Start/End: Complemental strand, 8974620 - 8974543
Alignment:
| Q |
37 |
cttttaaaagtgctgctacacctgcaacgtgtggacatgacattgatgttccacttaacaagttgaagttgttgaaga |
114 |
Q |
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| T |
8974620 |
ctttcaaaagtgctcctacaccagcaacatgaggagatgacatagatgttccacttaaaaaattgaacttgttgaaga |
8974543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 111
Target Start/End: Complemental strand, 8963224 - 8963150
Alignment:
| Q |
37 |
cttttaaaagtgctgctacacctgcaacgtgtggacatgacattgatgttccacttaacaagttgaagttgttga |
111 |
Q |
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| T |
8963224 |
ctttcaaaagtgctcctacaccggcaacatgaggacatgacatagatgttccagttaaaaaattgaacttgttga |
8963150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 114
Target Start/End: Complemental strand, 8958210 - 8958133
Alignment:
| Q |
37 |
cttttaaaagtgctgctacacctgcaacgtgtggacatgacattgatgttccacttaacaagttgaagttgttgaaga |
114 |
Q |
| |
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|||| |||||||| || ||||||||||| || ||||||| ||| ||||||||||||| || ||||| |||||||||| |
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| T |
8958210 |
ctttcaaaagtgccgcgacacctgcaacatgaggacatgccatagatgttccacttatcacattgaacttgttgaaga |
8958133 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 114
Target Start/End: Original strand, 19375734 - 19375811
Alignment:
| Q |
37 |
cttttaaaagtgctgctacacctgcaacgtgtggacatgacattgatgttccacttaacaagttgaagttgttgaaga |
114 |
Q |
| |
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|||| |||||| ||||| |||||||||||| ||||||| ||| ||||||||||||| ||| ||||| |||||||||| |
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| T |
19375734 |
ctttcaaaagtaatgctatacctgcaacgtgaggacatgccatagatgttccacttatcaaattgaacttgttgaaga |
19375811 |
T |
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