View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12965_low_3 (Length: 651)
Name: NF12965_low_3
Description: NF12965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12965_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 596; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 23 - 638
Target Start/End: Complemental strand, 32272486 - 32271872
Alignment:
| Q |
23 |
acatcggatgataaagataatataatttaaaactcgcaaaccttataaacatgttgtgtctgtgtctagatccgtgtcaagaaacatttcgcttttataa |
122 |
Q |
| |
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||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32272486 |
acatcggatgagaaagataatataatttaaaacttgcaaaccttataaacatgttgtgtctgtgtctagatccgtgtcaagaaacatttcgcttttataa |
32272387 |
T |
|
| Q |
123 |
attatattattttcatgttcattaaattattcaattttggtcttaaccaataataagcatttcaaagtaatatacattgtttatatgtatgaattatttt |
222 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32272386 |
attatattattttcatgttcat-aaattattcaattttggtcttaaccaataataagcatttcaaagtaatatacattgtttatatgtatgaattatttt |
32272288 |
T |
|
| Q |
223 |
gattttgatcttcatgtcacacagtgaaggaagttaagaaaaagcaaaaatggtgaaaatttgttgcattggagctggatatgttggtggtcccacaatg |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32272287 |
gattttgatcttcatgtcacacagtgaaggaagttaagaaaaagcaaaaatggtgaaaatttgttgcattggagctggatatgttggtggtcccacaatg |
32272188 |
T |
|
| Q |
323 |
gctgtgattgccttgaagtgtcctaagattgcagtaaccgtggtcgatatttcagcgccgagaatcaacggttggaacagcgaccacctaccgatctatg |
422 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
32272187 |
gctgtgattgccttgaagtgtcctaagattgcagtaaccgtggtcgatatttcagcgccgagaatcaacggttggaacagcgaccacctaccgatctacg |
32272088 |
T |
|
| Q |
423 |
agccaggtcttgaagccgtggtgaaggagtgcaggggaaggaaccttttcttcagcactgaagtggagaaacatgttgcagaagctgatatagtctttgt |
522 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32272087 |
agccaggtcttgaagccgtggtgaaggagtgcaggggaaggaaccttttcttcagcactgaagtggagaaacatgttgcagaagctgatatagtctttgt |
32271988 |
T |
|
| Q |
523 |
atctgtgaacacaccaacaaaaactcatggtcttggagccggcaaagcggctgatttaacatactgggagagttccgctcggatgattgccgatgtttct |
622 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32271987 |
atctgtgaacacaccaacaaaaactcatggtcttggagccggcaaagcggctgatttaacatactgggagagttccgctcggatgattgccgatgtttct |
32271888 |
T |
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| Q |
623 |
aaatcggacaaaattg |
638 |
Q |
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|||||||||||||||| |
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| T |
32271887 |
aaatcggacaaaattg |
32271872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 471 - 638
Target Start/End: Complemental strand, 45416130 - 45415963
Alignment:
| Q |
471 |
tcttcagcactgaagtggagaaacatgttgcagaagctgatatagtctttgtatctgtgaacacaccaacaaaaactcatggtcttggagccggcaaagc |
570 |
Q |
| |
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||||||||||||| | || ||||||||| ||||| |||||| ||||||| ||| ||||||||||||||||| ||| |||||||| |||||||| |
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| T |
45416130 |
tcttcagcactgatatagaaaaacatgtttatgaagcggatataatctttgttaatgtcaacacaccaacaaaaacaagtggccttggagctggcaaagc |
45416031 |
T |
|
| Q |
571 |
ggctgatttaacatactgggagagttccgctcggatgattgccgatgtttctaaatcggacaaaattg |
638 |
Q |
| |
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||| |||||||| || ||||| ||| | || | ||||| ||||||||||| | ||| ||||||||| |
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| T |
45416030 |
ggcggatttaacttattgggaaagtgcagcgagaatgatagccgatgtttcaagatcaaacaaaattg |
45415963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 290 - 334
Target Start/End: Complemental strand, 45416311 - 45416267
Alignment:
| Q |
290 |
attggagctggatatgttggtggtcccacaatggctgtgattgcc |
334 |
Q |
| |
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||||||||||||||||| || ||||| ||||||||||| |||||| |
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| T |
45416311 |
attggagctggatatgtagggggtccaacaatggctgttattgcc |
45416267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 143; Significance: 9e-75; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 268 - 638
Target Start/End: Complemental strand, 19327411 - 19327041
Alignment:
| Q |
268 |
aaaaatggtgaaaatttgttgcattggagctggatatgttggtggtcccacaatggctgtgattgccttgaagtgtcctaagattgcagtaaccgtggtc |
367 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||| |||||| ||| | || || |
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| T |
19327411 |
aaaaatggtgaagatttgttgcattggagctggctatgttggtggtccaacaatggctgtgattgctttgaagtgtcctgagattgaggtagctgttgtt |
19327312 |
T |
|
| Q |
368 |
gatatttcagcgccgagaatcaacggttggaacagcgaccacctaccgatctatgagccaggtcttgaagccgtggtgaaggagtgcaggggaaggaacc |
467 |
Q |
| |
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||||| | |||| ||||||| | ||||||||| |||||| | || || |||||||| |||||||| | ||||||||| ||||||| |||| ||||| |
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| T |
19327311 |
gatatcgccacgcctcgaatcaatgcttggaacagtgaccacttgcctatatatgagcctggtcttgatgatgtggtgaagaagtgcagaggaaagaacc |
19327212 |
T |
|
| Q |
468 |
ttttcttcagcactgaagtggagaaacatgttgcagaagctgatatagtctttgtatctgtgaacacaccaacaaaaactcatggtcttggagccggcaa |
567 |
Q |
| |
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|||||||||||||||| || |||||||||||||| || ||| | || || ||||| || |||||||| || || || ||||| ||||||||||| ||||| |
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| T |
19327211 |
ttttcttcagcactgatgttgagaaacatgttgccgaggctaacatcgtgtttgtttcggtgaacactccgaccaagactcagggtcttggagctggcaa |
19327112 |
T |
|
| Q |
568 |
agcggctgatttaacatactgggagagttccgctcggatgattgccgatgtttctaaatcggacaaaattg |
638 |
Q |
| |
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||| |||||| | || |||||||||||| | ||| | |||||||| |||||||| |||||||||||||||| |
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| T |
19327111 |
agcagctgatctcacttactgggagagtgctgctagaatgattgctgatgtttcaaaatcggacaaaattg |
19327041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 512 - 636
Target Start/End: Complemental strand, 3665034 - 3664910
Alignment:
| Q |
512 |
atagtctttgtatctgtgaacacaccaacaaaaactcatggtcttggagccggcaaagcggctgatttaacatactgggagagttccgctcggatgattg |
611 |
Q |
| |
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||||| ||||| ||||||||||| || || |||||||| ||||| || ||||||||||| || ||||| || || |||||||| | ||||| ||||||| |
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| T |
3665034 |
atagtgtttgtctctgtgaacaccccgactaaaactcagggtctcggtgccggcaaagcagcagatttgacgtattgggagagcgcagctcgtatgattg |
3664935 |
T |
|
| Q |
612 |
ccgatgtttctaaatcggacaaaat |
636 |
Q |
| |
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||||||| || || || |||||||| |
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| T |
3664934 |
ccgatgtctcaaagtctgacaaaat |
3664910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 269 - 333
Target Start/End: Complemental strand, 3665277 - 3665213
Alignment:
| Q |
269 |
aaaatggtgaaaatttgttgcattggagctggatatgttggtggtcccacaatggctgtgattgc |
333 |
Q |
| |
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||||||||||| ||||| |||||||| || |||||||| |||||||| |||||||| || ||||| |
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| T |
3665277 |
aaaatggtgaagatttgctgcattggtgccggatatgtcggtggtccaacaatggcagtcattgc |
3665213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 465 - 638
Target Start/End: Complemental strand, 10779356 - 10779183
Alignment:
| Q |
465 |
accttttcttcagcactgaagtggagaaacatgttgcagaagctgatatagtctttgtatctgtgaacacaccaacaaaaactcatggtcttggagccgg |
564 |
Q |
| |
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||||||||||||||||||| || || |||||||| |||||| | || || ||||||| ||| |||| | || |||||||| |||||||||| | |
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| T |
10779356 |
accttttcttcagcactgatgttgaaaaacatgtctatgaagctaaaattgtgtttgtatttgtcaacatgctgactaaaactcacagtcttggagctgt |
10779257 |
T |
|
| Q |
565 |
caaagcggctgatttaacatactgggagagttccgctcggatgattgccgatgtttctaaatcggacaaaattg |
638 |
Q |
| |
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|| ||| || ||||||||||| || |||||| | ||| ||||||| ||| ||||||||||||| || ||||||| |
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| T |
10779256 |
cacagccgcagatttaacatattgcgagagtgcggcttggatgatcgccaatgtttctaaatctgaaaaaattg |
10779183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 463 - 547
Target Start/End: Complemental strand, 4835726 - 4835643
Alignment:
| Q |
463 |
gaaccttttcttcagcactgaagtggagaaacatgttgcagaagctgatatagtctttgtatctgtgaacacaccaacaaaaact |
547 |
Q |
| |
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||||||||||||||||| ||| || | ||||||||| | | ||||| ||||| ||||||||||| || ||||||||||||||| |
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| T |
4835726 |
gaaccttttcttcagcattgatgtcaaaaaacatgttataca-gctgacatagtgtttgtatctgtcaatacaccaacaaaaact |
4835643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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