View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12965_low_31 (Length: 232)
Name: NF12965_low_31
Description: NF12965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12965_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 17 - 212
Target Start/End: Original strand, 49008455 - 49008650
Alignment:
| Q |
17 |
cacagacattggtaatggttacagaccagcttcacctttagctttgggagccggacatatcaatcccaatagagcacttgatcctggacttgtttatgat |
116 |
Q |
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| T |
49008455 |
cacagacattggtaatggttacagaccagcttcacctttagctttgggagccggacatatcaatcccaatagagcacttgatcctggacttgtttatgat |
49008554 |
T |
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| Q |
117 |
gcaggaaaacaagattatgtgaatcttctatgtgcattaaacttcactcagaagaatatcgcgcccatcacgagatcgtcttttaacaattgttct |
212 |
Q |
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| T |
49008555 |
gcaggaaaacaagattatgtgaatcttctatgtgcattaaacttcactcagaagaatatcgcagccatcacgagatcgtcttttaacaattgttct |
49008650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 20 - 163
Target Start/End: Complemental strand, 21686934 - 21686791
Alignment:
| Q |
20 |
agacattggtaatggttacagaccagcttcacctttagctttgggagccggacatatcaatcccaatagagcacttgatcctggacttgtttatgatgca |
119 |
Q |
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| T |
21686934 |
agacattggaaatggtaacagagcagcaactccttttgcattgggagctggtcatattaaccctaatagagcacttgatcctggtcttgtttatgatatc |
21686835 |
T |
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| Q |
120 |
ggaaaacaagattatgtgaatcttctatgtgcattaaacttcac |
163 |
Q |
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| T |
21686834 |
ggtgtacaagattatattaatcttctttgtgcacttaacttcac |
21686791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 49 - 152
Target Start/End: Complemental strand, 34962525 - 34962422
Alignment:
| Q |
49 |
cacctttagctttgggagccggacatatcaatcccaatagagcacttgatcctggacttgtttatgatgcaggaaaacaagattatgtgaatcttctatg |
148 |
Q |
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| T |
34962525 |
caccttttgcattgggagctggtcatgttaatcctaatagagcacttgaccctggtcttgtttatgatgttggtgtacaagattatgtgaatcttctttg |
34962426 |
T |
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| Q |
149 |
tgca |
152 |
Q |
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|||| |
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| T |
34962425 |
tgca |
34962422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 163
Target Start/End: Complemental strand, 8945712 - 8945628
Alignment:
| Q |
79 |
atcccaatagagcacttgatcctggacttgtttatgatgcaggaaaacaagattatgtgaatcttctatgtgcattaaacttcac |
163 |
Q |
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| T |
8945712 |
atcccaatagagcacttgaccctggtcttgtttatgatgttggtgtacaagattatgttaatcttctttgtgcacttaacttcac |
8945628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 163
Target Start/End: Original strand, 8974752 - 8974852
Alignment:
| Q |
63 |
ggagccggacatatcaatcccaatagagcacttgatcctggacttgtttatgatgcaggaaaacaagattatgtgaatcttctatgtgcattaaacttca |
162 |
Q |
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| T |
8974752 |
ggagctggtcatatcaaccccaacaaagcacttaaccctggacttgtttatgatgttggtgtacaagattatgtcaatcttctttgtgcactcaacttca |
8974851 |
T |
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| Q |
163 |
c |
163 |
Q |
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| T |
8974852 |
c |
8974852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 49 - 163
Target Start/End: Original strand, 8963342 - 8963456
Alignment:
| Q |
49 |
cacctttagctttgggagccggacatatcaatcccaatagagcacttgatcctggacttgtttatgatgcaggaaaacaagattatgtgaatcttctatg |
148 |
Q |
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| T |
8963342 |
caccttttgcattgggagctggtcatatcaaccctaataaagcacttgaccctggtcttgtttatgatattggtgtacaagattatgttaattttctttg |
8963441 |
T |
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| Q |
149 |
tgcattaaacttcac |
163 |
Q |
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| T |
8963442 |
tgcacttaacttcac |
8963456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 152
Target Start/End: Original strand, 8958330 - 8958431
Alignment:
| Q |
51 |
cctttagctttgggagccggacatatcaatcccaatagagcacttgatcctggacttgtttatgatgcaggaaaacaagattatgtgaatcttctatgtg |
150 |
Q |
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| T |
8958330 |
ccttttgcattgggagctggtcatgttaatccaaatagagcacttgaccctggtcttatttatgatgttggtgtacaagattatgttaatcttctttgtg |
8958429 |
T |
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| Q |
151 |
ca |
152 |
Q |
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|| |
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| T |
8958430 |
ca |
8958431 |
T |
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