View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12965_low_4 (Length: 639)
Name: NF12965_low_4
Description: NF12965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12965_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 535; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 19 - 623
Target Start/End: Complemental strand, 4634099 - 4633481
Alignment:
| Q |
19 |
tactattgatgatttgatgagcat-acaaattctactgtcatgttttgatgtaaacaattaggctaagtaccgctgccggctcaaaaaccatagttgatg |
117 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
4634099 |
tactattgatgatttgatgagcattacaaattctactgtcatgttttgatgtaaacaattaggctaagtagcgctgccggctcaaaaaccatagttgatg |
4634000 |
T |
|
| Q |
118 |
tctattattgaactgcgtgaatagaaagtatgactaggcatataagatggttggcatttaacttgaacaccataagtgactgatgcttttgtaggtgcaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4633999 |
tctattattgaactgcgtgaatagaaagtatgactaggcatataagatggttggcatttaacttgaacaccagaagtgactgatgcttttgtaggtgcaa |
4633900 |
T |
|
| Q |
218 |
tgtacagaaaggaatgaaagcactaactgatgcttttgttttgat-------------gttgatatgtttttataggctgcagttgcacattttctaaat |
304 |
Q |
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|||||||||| |||| ||| |||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
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| T |
4633899 |
tgtacagaaatgaataaaatcactaattgatgcttttgttttgattgttgagtttgatgttgatctgtttttataggctgcagttgcacattttctaaat |
4633800 |
T |
|
| Q |
305 |
agatataaaaatgtggcatcgtaattggatttgttttaggtttttcttgatgaatatttgggttttgtttgtgtttcagtaccatccagatgagtgcaaa |
404 |
Q |
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| T |
4633799 |
agatataaaaatgtggcatcgtaattggatttgttttaggtttttcttgatgaatatttgggttttgtttgtgtttcagtaccatccagatgagtgcaaa |
4633700 |
T |
|
| Q |
405 |
ggaagagattgtggggcgcagtttcacttgatcaatgaggcttatgatgtgagttttcctaaaatttcactaaaatatccttaattttcattgcatagtt |
504 |
Q |
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| T |
4633699 |
ggaagagattgtggggcgcagtttcacttgatcaatgaagcttatgatgtgagttttcctaaaatttcactaaaatatccttaattttcattgcatagtt |
4633600 |
T |
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| Q |
505 |
aatttaattgttataattgtttgggttgattactatttttagatccttaaatatatggacattgattgatattggagatttaagatcaatcggttcacat |
604 |
Q |
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| T |
4633599 |
aatttaattgttataattgtttgggttgattactatttttagatccttaaatatatggacattgattgatattggagatttaagatcaatcggttcacat |
4633500 |
T |
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| Q |
605 |
ttgatctttactagatagt |
623 |
Q |
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| T |
4633499 |
ttgatctttactagatagt |
4633481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 162; Significance: 4e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 375 - 603
Target Start/End: Complemental strand, 1080929 - 1080711
Alignment:
| Q |
375 |
gtgtttcagtaccatccagatgagtgcaaaggaagagattgtggggcgcagtttcacttgatcaatgaggcttatgatgtgagttttcctaaaatttcac |
474 |
Q |
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||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
1080929 |
gtgtttcagtaccatcctgatgtgtgcaaaggaagagattgtggggtgcagtttcacttgatcaatgaggcttatgatgtgagttttcctaaaatttctc |
1080830 |
T |
|
| Q |
475 |
taaaatatccttaattttcattgcatagttaatttaattgttataattgtttgggttgattactatttttagatccttaaatatatggacattgattgat |
574 |
Q |
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| T |
1080829 |
ttaactatccttaatttttattgcatagttaatttaattgttataattgtttgggttgattactatttttagatcctttaatatatg----------gat |
1080740 |
T |
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| Q |
575 |
attggagatttaagatcaatcggttcaca |
603 |
Q |
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| T |
1080739 |
attggagatttaagatcaatcggttcaca |
1080711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 132; Significance: 3e-68; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 19 - 262
Target Start/End: Complemental strand, 660434 - 660190
Alignment:
| Q |
19 |
tactattgatgatttgatgagcatacaaattctactgtcatgttttgatgtaaacaattaggctaagtaccgctgccggctcaaaaaccatagttgatgt |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
660434 |
tactattgatgatttgatgagcatacaaattctactgtcatgttttgttgtaaacaattaggctaagtagcgctgccggctcaaaaaccatggttgatgt |
660335 |
T |
|
| Q |
119 |
ctattattgaactgcgtgaatagaaagtatgactaggcatataagatggttggcatttaacttgaacaccataag----tgactgatgcttttgtaggtg |
214 |
Q |
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||||||||||||||||||| || ||||||| |||||||| ||| ||||||||| |||||||||| ||||| |||| ||| |||||||| | | |
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| T |
660334 |
tcattattgaactgcgtgaatctaatctatgact--gcatataaaatgcttggcattt-acttgaacactataagtgaatgaccgatccttttgtaagcg |
660238 |
T |
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| Q |
215 |
caatgtacagaaaggaatgaaagcactaactgatgcttttgttttgat |
262 |
Q |
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||||||||| ||| ||||| ||||||| |||||||||||||||||||| |
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| T |
660237 |
caatgtacaaaaatgaatgtaagcactgactgatgcttttgttttgat |
660190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 299
Target Start/End: Complemental strand, 660175 - 660140
Alignment:
| Q |
264 |
ttgatatgtttttataggctgcagttgcacattttc |
299 |
Q |
| |
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||||| |||||||||||||||||||||||||||||| |
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| T |
660175 |
ttgatctgtttttataggctgcagttgcacattttc |
660140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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