View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12965_low_6 (Length: 602)

Name: NF12965_low_6
Description: NF12965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12965_low_6
NF12965_low_6
[»] chr6 (10 HSPs)
chr6 (145-594)||(4035358-4035817)
chr6 (41-115)||(4035846-4035919)
chr6 (340-419)||(4287860-4287940)
chr6 (379-419)||(4273983-4274023)
chr6 (411-442)||(4274044-4274075)
chr6 (208-276)||(4029096-4029161)
chr6 (81-114)||(4277674-4277707)
chr6 (81-114)||(4287686-4287719)
chr6 (82-110)||(4262189-4262217)
chr6 (74-114)||(4272185-4272225)


Alignment Details
Target: chr6 (Bit Score: 364; Significance: 0; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 145 - 594
Target Start/End: Complemental strand, 4035817 - 4035358
Alignment:
Q  145 acagtcattaactgttagtgaaatcacttttcagatctcaaaacaatctgcaatcaagcacaaacaaacacacaaataaatgtaactaatattatatctt 244  Q
    |||||||||||||||||||| ||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  4035817 acagtcattaactgttagtgtaatcacttttca--tctcaaaacaatctgcaatcaaccacaaacaaacacacaaataaatgtaactaatattatatctt 4035720  T
Q  245 tgtgcttgtcattgatgatgaatgctaagaaacacggttactccaatgccccaccatgtcccaccataaacaacatgccaaattcaacctacttaaaa-- 342  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||      
T  4035719 tgtgcttgtcattgatgatgaatgctaagaaacacggttactccaatgccccaccatgtcccaccataaacaacattccaaattcaacctacttaaaaaa 4035620  T
Q  343 -------taatctcattttcttcaaaaactttttacaatttcgtcatcaa-gctttcattgatgaataagtcctgattatagaataatttaatgtgcaaa 434  Q
           ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  4035619 cttaaaataatctcattttcttcaaaaactttttgcaatttcgtcatcaaagctttcattgatgaataagtcatgattatagaataatttaatgtgcaaa 4035520  T
Q  435 ccttttatgggattttcgttcttgatcgtgacattcttggaccaacataacaaac--taattatatatattttttcgtacaaacaatcattaaagtttaa 532  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||    
T  4035519 cattttatgggattttcgttcttgatcgtgacattcttggaccaacataacaaacattaattatatatattttttcgtacaaacaatcattaaactttaa 4035420  T
Q  533 attatgaaatattgttaattgatgctcttaaactatttgacacatctaactgtaatattctt 594  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  4035419 aatatgaaatattgttaattgatgctcttaaactatttgacacatctaactgtaattttctt 4035358  T

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Target: chr6; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 41 - 115
Target Start/End: Complemental strand, 4035919 - 4035846
Alignment:
Q  41 tgaatatttttattttgtgatcagaaaaatagtttttatgaattaacatcatgccaacaaaacaaatcttcacaa 115  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4035919 tgaatatttttattttgtgatc-gaaaaatagtttttatgaattaacatcatgccaacaaaacaaatcttcacaa 4035846  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 340 - 419
Target Start/End: Original strand, 4287860 - 4287940
Alignment:
Q  340 aaataatctcattttcttcaa-aaactttttacaatttcgtcatcaagctttcattgatgaataagtcctgattatagaat 419  Q
    ||||||| |||||||||| || ||||||||| | |||||||  ||||||||||||||||||||||||| |  |||||||||    
T  4287860 aaataatatcattttctttaataaactttttgcgatttcgtggtcaagctttcattgatgaataagtcatagttatagaat 4287940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 379 - 419
Target Start/End: Original strand, 4273983 - 4274023
Alignment:
Q  379 tcatcaagctttcattgatgaataagtcctgattatagaat 419  Q
    |||||||||||||||||||||||||||| || |||||||||    
T  4273983 tcatcaagctttcattgatgaataagtcatggttatagaat 4274023  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 442
Target Start/End: Original strand, 4274044 - 4274075
Alignment:
Q  411 ttatagaataatttaatgtgcaaaccttttat 442  Q
    ||||||||||||||||||||||||||||||||    
T  4274044 ttatagaataatttaatgtgcaaaccttttat 4274075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 276
Target Start/End: Complemental strand, 4029161 - 4029096
Alignment:
Q  208 acaaacacacaaataaatgtaactaatattatatctttgtgcttgtcattgatgatgaatgctaagaaa 276  Q
    ||||||||||||| ||||||||||| |  |||||||||||||| |||||||||| |||| | |||||||    
T  4029161 acaaacacacaaa-aaatgtaactatt--tatatctttgtgctcgtcattgatgttgaaggttaagaaa 4029096  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 114
Target Start/End: Original strand, 4277674 - 4277707
Alignment:
Q  81 aattaacatcatgccaacaaaacaaatcttcaca 114  Q
    ||||||||||||||||||||||||||||| ||||    
T  4277674 aattaacatcatgccaacaaaacaaatctccaca 4277707  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 114
Target Start/End: Original strand, 4287686 - 4287719
Alignment:
Q  81 aattaacatcatgccaacaaaacaaatcttcaca 114  Q
    |||||| |||||||||||||||||||||||||||    
T  4287686 aattaatatcatgccaacaaaacaaatcttcaca 4287719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 82 - 110
Target Start/End: Original strand, 4262189 - 4262217
Alignment:
Q  82 attaacatcatgccaacaaaacaaatctt 110  Q
    |||||||||||||||||||||||||||||    
T  4262189 attaacatcatgccaacaaaacaaatctt 4262217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 4272185 - 4272225
Alignment:
Q  74 ttttatgaattaacatcatgccaacaaaacaaatcttcaca 114  Q
    |||| ||||||| ||| ||||||||||||||||||||||||    
T  4272185 ttttgtgaattagcatgatgccaacaaaacaaatcttcaca 4272225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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