View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12965_low_7 (Length: 553)
Name: NF12965_low_7
Description: NF12965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12965_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 509; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 1 - 537
Target Start/End: Original strand, 10255561 - 10256097
Alignment:
| Q |
1 |
aaggatcggaattctaccgagatatgctagtgatgagtcgaagatgaaatggtttgatgtgccagggtttaatattatgcacgcgataaacgcatgggat |
100 |
Q |
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| T |
10255561 |
aaggatcggaattctaccgagatatgctagtgatgagtcgaagatgaaatggtttgatgtgccagggtttaatattatgcacgcgataaactcatgggat |
10255660 |
T |
|
| Q |
101 |
ggggaagatgatgaggaaactgtgacactaattgctccgaatgttctctccattgagcatacgatggagagacttgagctagttcatgcaatgattgaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10255661 |
ggggaagatgatgaggaaactgtgacactaattgctccaaatgttctctccattgagcatacgatggagagacttgagctagttcatgcaatgattgaga |
10255760 |
T |
|
| Q |
201 |
aggtaaagataaatattaaaactgggattgtatcaagacaaccattatcggcgcgaaacctggatttcgcggtgataaatggtgattatatggggaagaa |
300 |
Q |
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| T |
10255761 |
aggtaaagataaatattaaaactgggattgtatcaagacaaccattatcggcgcgaaacctggatttcgcggtgataaatggtgattatatggggaagaa |
10255860 |
T |
|
| Q |
301 |
gaataggtttgtttatgcggcaattgggaatccaatgccgaagatttctggcgtggtgaagatagatgtgttgaaaggggaggaagttgggtgtaggttg |
400 |
Q |
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| T |
10255861 |
gaataggtttgtttatgcggcaattgggaatccaatgccgaagatttctggggtggtgaagatagatgtgttgaaaggggaggaagttgggtgtaggttg |
10255960 |
T |
|
| Q |
401 |
tatggagaggattgttatggtggtgagccgtttttcgtggcgagggaggatggtgatgaagaggatgatggttatttagtgagttatgttcatgatgaga |
500 |
Q |
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| T |
10255961 |
tatggagagggttgttatggtggtgagccgtttttcgtggcgagggaggatggtgaagaagaggatgatggttatttagtgagttatgtgcatgatgaga |
10256060 |
T |
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| Q |
501 |
agaagggagagtctaagtttttggtgatggatgctaa |
537 |
Q |
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| T |
10256061 |
aaaagggagagtctaagtttttggtgatggatgctaa |
10256097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 537
Target Start/End: Complemental strand, 10239044 - 10238511
Alignment:
| Q |
1 |
aaggatcggaattctaccgagatatgctagtgatgagtcgaagatgaaatggtttgatgtgccagggtttaatattatgcacgcgataaacgcatgggat |
100 |
Q |
| |
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|||||||||||||||||| | |||||| | | |||||||||||||| ||||||||||| || ||| ||||||||||||| |||||||||||||||| |
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| T |
10239044 |
aaggatcggaattctacctcgttatgctgataacgagtcgaagatgaagtggtttgatgttcctgggcttaatattatgcatttgataaacgcatgggat |
10238945 |
T |
|
| Q |
101 |
ggggaagatgatgaggaaactgtgacactaattgctccgaatgttctctccattgagcatacgatggagagacttgagctagttcatgcaatgattgaga |
200 |
Q |
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| |||||||| | |||| |||||| || |||| |||||| |||||| | | ||||||| |||||||||| | ||||| |||||| ||||||||||| |
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| T |
10238944 |
gaggaagatgg---gaaaacagtgacaatagttgcaccgaatattctctgcgtggagcatatgatggagagattggagcttattcatgaaatgattgaga |
10238848 |
T |
|
| Q |
201 |
aggtaaagataaatattaaaactgggattgtatcaagacaaccattatcggcgcgaaacctggatttcgcggtgataaatggtgattatatggggaagaa |
300 |
Q |
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| || | || || | |||| ||||| ||| |||||||||| ||||| || |||| || ||||| || |||||||| ||| | | |||||||||| |
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| T |
10238847 |
aagtgagaattaacgtcgaaacggggatagtaacaagacaaccgttatcagcaagaaatcttgatttggcagtgataaacaatgagtttttggggaagaa |
10238748 |
T |
|
| Q |
301 |
gaataggtttgtttatgcggcaattgggaatccaatgccgaagatttctggcgtggtgaagatagatgtgttgaaaggggaggaagttgggtgtaggttg |
400 |
Q |
| |
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| |||||| |||| ||||| ||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10238747 |
acacaggtttatttacgcggcgattgggaatccaatgccgaagttttcgggggtggtgaagatagatgtgttgaaaggggaggaagttgggtgtaggttg |
10238648 |
T |
|
| Q |
401 |
tatggagaggattgttatggtggtgagccgtttttcgtggcgagggaggatggtgatgaagaggatgatggttatttagtgagttatgttcatgatgaga |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||| |
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| T |
10238647 |
tatggagaggattgttatggtggtgagccgtttttcgtggctagggaagatggtgaggaagaggatgatggttatttagtgagttatgtgcatgatgaga |
10238548 |
T |
|
| Q |
501 |
agaagggagagtctaagtttttggtgatggatgctaa |
537 |
Q |
| |
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||||||||||||| | ||||||||||||||||||||| |
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| T |
10238547 |
agaagggagagtcaaggtttttggtgatggatgctaa |
10238511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 534
Target Start/End: Complemental strand, 10230264 - 10229734
Alignment:
| Q |
1 |
aaggatcggaattctaccgagatatgctagtgatgagtcgaagatgaaatggtttgatgtgccagggtttaatattatgcacgcgataaacgcatgggat |
100 |
Q |
| |
|
|||||||||||||||||| | ||||||| ||| ||||| |||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
10230264 |
aaggatcggaattctacctcgttatgctaatgacgagtccaagatgaagtggtttgatgttccagggtttaatattatgcatacgataaacgcatgggat |
10230165 |
T |
|
| Q |
101 |
ggggaagatgatgaggaaactgtgacactaattgctccgaatgttctctccattgagcatacgatggagagacttgagctagttcatgcaatgattgaga |
200 |
Q |
| |
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| |||||||| || ||| |||||| | | || ||||| || | || | ||||| |||||||||| | || || ||||||| |||||||||| |
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| T |
10230164 |
gaggaagatgg---gggaacagtgacattggtagcaacgaatattttgtcagtgcagcatgtgatggagagaatggaccttattcatgccatgattgaga |
10230068 |
T |
|
| Q |
201 |
aggtaaagataaatattaaaactgggattgtatcaagacaaccattatcggcgcgaaacctggatttcgcggtgataaatggtgattatatggggaagaa |
300 |
Q |
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| || | ||| ||| | |||| ||| | ||| |||||||||||||||| || |||| || ||||| || |||||||| ||||| | |||||||||| |
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| T |
10230067 |
aagtgaggattaatgtcgaaacggggttagtaacaagacaaccattatcagcaagaaatcttgatttggcagtgataaacaatgattttttggggaagaa |
10229968 |
T |
|
| Q |
301 |
gaataggtttgtttatgcggcaattgggaatccaatgccgaagatttctggcgtggtgaagatagatgtgttgaaaggggaggaagttgggtgtaggttg |
400 |
Q |
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|| ||||||||||||||| || ||||||||||||||||| ||| |||| || ||||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
10229967 |
gagtaggtttgtttatgcagcgattgggaatccaatgccaaagttttcgggggtggtgaagattgatgtgttgaaaggggaggaagttggatgtaggttg |
10229868 |
T |
|
| Q |
401 |
tatggagaggattgttatggtggtgagccgtttttcgtggcgagggaggatggtgatgaagaggatgatggttatttagtgagttatgttcatgatgaga |
500 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||| ||| | |||||| |||||||||||||||||||||||||||||||| |||||||||| |
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| T |
10229867 |
tatggagagggttgttatggtggtgagccgtttttcgtggcgatggaaggtggtgaggaagaggatgatggttatttagtgagttatgtgcatgatgaga |
10229768 |
T |
|
| Q |
501 |
agaagggagagtctaagtttttggtgatggatgc |
534 |
Q |
| |
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|||||||||| ||||||||||||||||||||||| |
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| T |
10229767 |
agaagggagaatctaagtttttggtgatggatgc |
10229734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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