View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12965_low_8 (Length: 546)
Name: NF12965_low_8
Description: NF12965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12965_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 492; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 17 - 528
Target Start/End: Complemental strand, 3642801 - 3642290
Alignment:
| Q |
17 |
cattcagtatgtttcaaataatgcaagaggatagtgttctctcctccctgatcatattacttatatttgagttttttatgcatgtagtcatgttggattg |
116 |
Q |
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||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3642801 |
cattcagtatgtttcaaataatgcaagtggatagtgttctctactccctgatcatattacttatatttgagttttttatgcatgtagtcatgttggattg |
3642702 |
T |
|
| Q |
117 |
gttgaagaggctcaaagacaatttaacctgataacaaagaggtatggtttagtgccagaaagagagcgttatgattcacggttgatcttttgattcgggc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3642701 |
gttgaagaggctcaaagacaatttaacctgataacaaagaggtatggtatagtgccagaaagagagcgttatgattcacggttgatcttttgattcgggc |
3642602 |
T |
|
| Q |
217 |
aggtaatttccaagagacggaaaaactaatgaagacaatgtcaataaaaccaaatattgccatattcggtgctcttttaaatggtttccagattcatgaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3642601 |
aggtaatttccaagagacggaaaaactaatgaagacaatgtcaataaaaccaaatattgccatattcggtgctcttttaaatggtttccagattcatgaa |
3642502 |
T |
|
| Q |
317 |
aacgtctatgttgctagtcaggtgaaagtacgactaaccaagctgaaaccttttcaaaatgaagcataaaaggattgcaaagacaattggtcatggttca |
416 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3642501 |
aacgtctatgttgctagtcaagtgaaagtacgactaaccaagctgaaaccttttcaaaatgaagcataaaaggattgcaaagacaattggtcatggttca |
3642402 |
T |
|
| Q |
417 |
gttgaaatgaagctgctaactttatgatcgtctcaagattcatttgttgtctcaaattttaaagtattgactgccagagaagtttcaacaaggaaaatcg |
516 |
Q |
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| T |
3642401 |
gttgaaatgaagctgctaactttatgatcgtctcaagattcatttgttgtctcaaattttaaagtattgactgccggagaagtttcaacaaggaaaatcg |
3642302 |
T |
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| Q |
517 |
gaaccattgtct |
528 |
Q |
| |
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|||||||||||| |
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| T |
3642301 |
gaaccattgtct |
3642290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 17 - 374
Target Start/End: Complemental strand, 9807342 - 9806986
Alignment:
| Q |
17 |
cattcagtatgtttcaaataatgcaagaggatagtgttctctcctccctgatcatattacttatatttgagttttttatgcatgtagtcatgttggattg |
116 |
Q |
| |
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|||| ||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||| ||||||| | |||||||||||||||||||||| |
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| T |
9807342 |
cattgagtttgtttcaaataatgcaagaggatagt--tctctagtccctgatcatattacttacattggagttttatttgcatgtagtcatgttggattg |
9807245 |
T |
|
| Q |
117 |
gttgaagaggctcaaagacaatttaacctgataacaaagaggtatggtttagtgccagaaagagagcgttatgattc-acggttgatcttttgattcggg |
215 |
Q |
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|| ||||||||||||| |||||||||||| || |||||||| |||||| || |||| |||| ||||| ||| || | |||||||||||||| ||||| |
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| T |
9807244 |
gtcgaagaggctcaaaaacaatttaaccttatgacaaagagttatggtatactgccggaaaaagagcactatagttgtatggttgatcttttgagtcggg |
9807145 |
T |
|
| Q |
216 |
caggtaatttccaagagacggaaaaactaatgaagacaatgtcaataaaaccaaatattgccatattcggtgctcttttaaatggtttccagattcatga |
315 |
Q |
| |
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||||| |||| |||| |||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
9807144 |
caggtcattttagagaggcggaaaaactaatggagacaatgtcaatacgaccaaatattgccatatggggtgctcttttaaatggttgccagattcatga |
9807045 |
T |
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| Q |
316 |
aaacgtctatgttgctagtcaggtgaaagtacgactaaccaagctgaaaccttttcaaa |
374 |
Q |
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|||| || |||||||||||| |||||||||||| || | ||||| ||||| |||||| |
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| T |
9807044 |
aaacatccctgttgctagtcaagtgaaagtacgattagcagagctggaacctattcaaa |
9806986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 375 - 482
Target Start/End: Complemental strand, 9806908 - 9806801
Alignment:
| Q |
375 |
atgaagcataaaaggattgcaaagacaattggtcatggttcagttgaaatgaagctgctaactttatgatcgtctcaagattcatttgttgtctcaaatt |
474 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||| |
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| T |
9806908 |
atgaagcataaaaggattgcaaagacaattggtcatagttcagttgaaatgaagctgttaaccttatgattatctcaagattcatttgttgtctcaaatt |
9806809 |
T |
|
| Q |
475 |
ttaaagta |
482 |
Q |
| |
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||||||| |
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| T |
9806808 |
ataaagta |
9806801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 386 - 479
Target Start/End: Original strand, 10606738 - 10606831
Alignment:
| Q |
386 |
aaggattgcaaagacaattggtcatggttcagttgaaatgaagctgctaactttatgatcgtctcaagattcatttgttgtctcaaattttaaa |
479 |
Q |
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||||||||||| ||||||||||||| ||||| ||||||||||||| ||| | ||||| ||| |||||||||||| || |||||||| |||| |
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| T |
10606738 |
aaggattgcaatgacaattggtcatagttcaattgaaatgaagctattaagctcatgataatctgaagattcatttggtgactcaaattataaa |
10606831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 51
Target Start/End: Complemental strand, 10760999 - 10760970
Alignment:
| Q |
22 |
agtatgtttcaaataatgcaagaggatagt |
51 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
10760999 |
agtatgtttcaaataatgcaagaggatagt |
10760970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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