View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12966_high_3 (Length: 640)
Name: NF12966_high_3
Description: NF12966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12966_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 426; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 1 - 503
Target Start/End: Complemental strand, 13087550 - 13087052
Alignment:
| Q |
1 |
aatataaaattaaaaacttacgataatgtaaattacaaatcataggtttcaataaggtcgtattggatctggctcctatcaaaatggagtgaggtttttt |
100 |
Q |
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| T |
13087550 |
aatataaaattaaaaacttacgataatgtaaagtacaaatcatacgtttcaataaggtcgtattggatctggctcctatcaaaatggagtgaggtttttt |
13087451 |
T |
|
| Q |
101 |
ggatgtaataatgtgagtattgtttaatccaaacaaatgataatgattattactacatgaatatgctgatcattagagttacaagatcaaatggaaatta |
200 |
Q |
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| T |
13087450 |
ggatgtaataatgtgagtattgtttaatccaaacaaatgataatggttattacttcatgcatatgccgatcattagagttacaagatcaaatggaaatta |
13087351 |
T |
|
| Q |
201 |
aatgaggttagtgtaattaaatgaagtgaagagtgtaattaaaatacttacattggagtctcctgcatttgcatgaaggaagagagttagaagaagaaac |
300 |
Q |
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| T |
13087350 |
aatgagattagtgtaattaaataaagtgaagagggtaattaaaatacttacattggagtctcctgtatttgcatgaaggaagagagttagaagaagaaag |
13087251 |
T |
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| Q |
301 |
aactctaaggagtgattcttcattttctaattactttgtgatttgagttagatgcagattttggaatgtaaggaagatggagcaagcatatttacgcatt |
400 |
Q |
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| T |
13087250 |
aactctaaggagtgattcttcattttctaattactttgtgatttgagttagatgcagattttggaacgtaagaaagatggagcaagcatatttacgcatt |
13087151 |
T |
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| Q |
401 |
taatggcatttagatgagccaggtcaatacttttatttatttatttataagttaaatatgtttttaatccttctaaatatactatcaactttagttttag |
500 |
Q |
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| T |
13087150 |
taatggcatttagatgagccaggtcaatact----ttaatttatttataagttaaatatgtttttaatacttctaaatatactatcaactttagttttag |
13087055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 546 - 624
Target Start/End: Complemental strand, 13086908 - 13086833
Alignment:
| Q |
546 |
tatgtacaataagtaattagtttactaataacaccaccctcatgtatggttattagtggggtgctttttaacagctttt |
624 |
Q |
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| T |
13086908 |
tatgtacaataagtaattattttactaataacaccaccctcatgtatg---attagtggggtgctttttaacagctttt |
13086833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 555 - 620
Target Start/End: Original strand, 46922437 - 46922499
Alignment:
| Q |
555 |
taagtaattagtttactaataacaccaccctcatgtatggttattagtggggtgctttttaacagc |
620 |
Q |
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| T |
46922437 |
taagtaattattttactaataacaccacccccatgtatgg---ttagtggggggctttttaacagc |
46922499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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