View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12966_low_4 (Length: 563)
Name: NF12966_low_4
Description: NF12966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12966_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 11 - 495
Target Start/End: Original strand, 40310839 - 40311326
Alignment:
| Q |
11 |
catcatcaccaacaccagcaacagaaaccagtgttttcctttccttctatcattttcaagagtcctctcatatcttgataactcatatggcagctttttc |
110 |
Q |
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| T |
40310839 |
catcatcaccaacaccagcaacagaaaccagtgttttcctttccttctatcattttcaagagtcctctcatatcttgataactcatatggcagctttttc |
40310938 |
T |
|
| Q |
111 |
ataccaataccaacaaccctttcttgttgactctacatacttcaccaatataaacacttctcttcctccttctcatctttttcataatcatcaagaactc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40310939 |
ataccaataccaacaaccctttcttgttgactctacatacttcaccaatataaacacttctcttcctccttctcatctttttcataatcatcaagaactc |
40311038 |
T |
|
| Q |
211 |
tctctcagtaatcaagaaactagttgtgttgatcaaaactctaagaatagcataagcaacaaccagagtcctgaatcatccatggtagtggacaatcttg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40311039 |
tctctcagtaatcaagaaactagttgtgttgatcaaaactctaagaatagcataagtaacaaccagagtcctgaatcatccatggtagtggacaatcttg |
40311138 |
T |
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| Q |
311 |
aaaagggtgaacaagttactcagaaagctgttacttctatggagaagaaaagaagaatcagaaataagacttctttgactaaccccttctctaaggtaaa |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
40311139 |
aaaagggtgaacaagttactcagaaagctgttacttctatggagaagaaaagaagaatcagaaataagacttctttga------------ctaaggtaaa |
40311226 |
T |
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| Q |
411 |
tttgatgcagttttctttacccccnnnnnnnctata---------------tgtttcatgttattgattttgttactttgtggtatttgtaggatatctc |
495 |
Q |
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|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40311227 |
tttgatgcagttttctttaccccctttttttctatatgtttctgtgtgtgttgtttcatgttattgattttgttactttgtggtatttgtaggatatctc |
40311326 |
T |
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