View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12966_low_5 (Length: 332)
Name: NF12966_low_5
Description: NF12966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12966_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 19 - 319
Target Start/End: Original strand, 9632254 - 9632554
Alignment:
| Q |
19 |
attgcaatccacatacaagtcacagcaaaattataaaggtcaatgaccaattagaagagtttgacaggttttggtgttaatgtacaacttgcaaaatatg |
118 |
Q |
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| T |
9632254 |
attgcaatccacatacaagtcacagcaaaattataaaggtcaatgaccaattagaagagtttgacaggttttggtgttaatgtacaacttgcaaaatatg |
9632353 |
T |
|
| Q |
119 |
gttttgtttttctttgttccatcagaagatgctaattgctaggtttaggtgcttgcaactgtagattctgtttttcaataactctagctctgtgccttct |
218 |
Q |
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| T |
9632354 |
gttttgtttttctttgttccatcagaagatgctaattgctaggtttaggtgcttgcaactgtagattctgtttttcaataactctagctctgtgccttct |
9632453 |
T |
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| Q |
219 |
cttgaaaatatcttgcctgaatcgcttggtctcaatttgtatgtccatgaagggcctcttctctatgttttctttttcactttccaacatcttttgcctt |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9632454 |
cttgaaaatatcttgcctgaatcgcttggtctcaatttgtatgtccatgaaaggcctcttctctatgttttctttttcactttccaacatcttttgcctt |
9632553 |
T |
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| Q |
319 |
c |
319 |
Q |
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| T |
9632554 |
c |
9632554 |
T |
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