View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12966_low_6 (Length: 316)
Name: NF12966_low_6
Description: NF12966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12966_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 16 - 298
Target Start/End: Original strand, 34740871 - 34741153
Alignment:
| Q |
16 |
atgagcgagttgtaatgtgttatgtagcactcctcgtattagtaattagttgttaggttaattaatatttttctcttttgttaaggtttgaaatcaggct |
115 |
Q |
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| T |
34740871 |
atgagcgagttgtaatgtgttatgtagcactcctcgtgttagtaattagttgttaggttaattaatatttttctcttttgtttaggtttgaaatcaggct |
34740970 |
T |
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| Q |
116 |
ttcaaactccttcaatatttagtgcaaactagttgagatacattgcgccaaaattaagacttatttgatacataagattaagtctcgtttgatgtatata |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34740971 |
ttcaaactccttcaatatttagtgcaaactagttgagatacattgcgccaaaattaagacttatttgatacataagattaagtctcgtttgatgtatata |
34741070 |
T |
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| Q |
216 |
tgcgagtcactaaaaaatgtcacgagcaggaattaaatgggatttgtgcaaaattagagattaataaaactcttgtagattaa |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34741071 |
tgcgagtcactaaaaaatgtcacgagcaggaattaaatgggatttgtgcaaaattagagattaataaaactcttgtagattaa |
34741153 |
T |
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