View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12966_low_8 (Length: 266)

Name: NF12966_low_8
Description: NF12966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12966_low_8
NF12966_low_8
[»] chr7 (2 HSPs)
chr7 (20-263)||(49094403-49094644)
chr7 (14-190)||(38836181-38836353)
[»] chr6 (17 HSPs)
chr6 (14-190)||(5764428-5764603)
chr6 (14-190)||(5767963-5768138)
chr6 (14-190)||(5771498-5771673)
chr6 (14-190)||(5775033-5775208)
chr6 (14-190)||(5778568-5778743)
chr6 (14-190)||(5782103-5782278)
chr6 (14-190)||(5785638-5785813)
chr6 (14-190)||(5789173-5789348)
chr6 (14-190)||(5792708-5792883)
chr6 (14-190)||(5796243-5796418)
chr6 (14-190)||(5799778-5799953)
chr6 (14-190)||(5803313-5803488)
chr6 (14-190)||(5806848-5807023)
chr6 (14-190)||(5810383-5810558)
chr6 (14-190)||(5813918-5814093)
chr6 (14-190)||(5817453-5817628)
chr6 (14-190)||(8859178-8859351)
[»] chr2 (2 HSPs)
chr2 (26-162)||(45212799-45212935)
chr2 (85-186)||(21949820-21949921)
[»] chr1 (6 HSPs)
chr1 (14-186)||(13129134-13129303)
chr1 (29-186)||(11084586-11084740)
chr1 (21-142)||(3525941-3526060)
chr1 (14-113)||(43699443-43699540)
chr1 (14-190)||(27491825-27491998)
chr1 (14-186)||(34106360-34106529)
[»] chr4 (2 HSPs)
chr4 (14-190)||(2049026-2049198)
chr4 (20-186)||(41309897-41310060)
[»] chr8 (5 HSPs)
chr8 (28-191)||(15795933-15796092)
chr8 (14-188)||(40318469-40318639)
chr8 (14-190)||(2611803-2611976)
chr8 (84-172)||(39528449-39528537)
chr8 (20-72)||(40716072-40716124)
[»] chr3 (4 HSPs)
chr3 (14-191)||(34466687-34466858)
chr3 (21-102)||(3847741-3847822)
chr3 (96-183)||(3848221-3848308)
chr3 (21-102)||(51499727-51499808)
[»] chr5 (1 HSPs)
chr5 (36-186)||(33417477-33417625)


Alignment Details
Target: chr7 (Bit Score: 161; Significance: 6e-86; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 20 - 263
Target Start/End: Original strand, 49094403 - 49094644
Alignment:
Q  20 aaaggttatcctatagcaacaaaaacaaagagtagcctgccatgaaaagcaaatggctgcacatacccctaaagaattctaatatgacatagcaactatt 119  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||    
T  49094403 aaaggttatcctatagcaacaaaaacaaagagtatcctggcatgaaaagcaaatggctgcacgtacccctaaagaattctactctgacatagcaactatt 49094502  T
Q  120 atgcaaaatatatgagtatcaaaccttcctaattctataatcataaatatttgggattgattttgataacatannnnnnnnggaacgtgtttgtatgtgc 219  Q
    |||||||||||||||||| |||||||||||||| || |||||| ||||||||||||||| ||||||||||  |        |||||||||||||||||||    
T  49094503 atgcaaaatatatgagtaccaaaccttcctaatcctctaatcacaaatatttgggattgcttttgataac--accttttttggaacgtgtttgtatgtgc 49094600  T
Q  220 tccctacttgtgcttttgataagaggaccatttttcctagacaa 263  Q
    || ||||||||||||||||||||||||||| |||||||||||||    
T  49094601 tcactacttgtgcttttgataagaggaccacttttcctagacaa 49094644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 14 - 190
Target Start/End: Complemental strand, 38836353 - 38836181
Alignment:
Q  14 gaagcaaaaggttatcctatagcaacaaaaacaaagagtagcctgccatgaaaagcaaatggctgcacatacccctaaagaattct--aatatgacatag 111  Q
    ||||| ||||| ||||||||||||||||||     |||||||||| |||||||| | || |||| || ||||||| ||||||||||  |||  ||||||     
T  38836353 gaagccaaaggctatcctatagcaacaaaac----gagtagcctgtcatgaaaa-cgaagggctacatataccccaaaagaattctctaatcagacatat 38836259  T
Q  112 caactattatgcaaaatatatgagtatcaaaccttcctaattctataatcataaatatttgggattgattttgataaca 190  Q
    ||  | |||||||||||| |||||||||||| ||||||||| || ||||||  |||||||||||||| |||||||||||    
T  38836258 catatgttatgcaaaatacatgagtatcaaatcttcctaatcctctaatca-caatatttgggattgcttttgataaca 38836181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 8e-36; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 14 - 190
Target Start/End: Original strand, 5764428 - 5764603
Alignment:
Q  14 gaagcaaaaggttatcctatagcaacaaaaacaaagagtagcctgccatgaaaagcaaatggctgcacatacccctaaagaattctaatatgacatagca 113  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||| |||| || | |||| || ||| |||||||||||||||||  |||||||||    
T  5764428 gaagccaaaggctatcctatagcaacaaaaacaaagagtagcctgccataaaaaacacagggctacatatatccctaaagaattctaatcagacatagca 5764527  T
Q  114 actattatgcaaaatatatgagtatcaaaccttcctaattctataatcataaatatttgggattgattttgataaca 190  Q
      | |||||||||||| || ||||||||||||||||||| || |||| |  |||||||| ||||| |||| ||||||    
T  5764528 gatgttatgcaaaatacataagtatcaaaccttcctaatcctctaatta-caatatttgagattgttttttataaca 5764603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 14 - 190
Target Start/End: Original strand, 5767963 - 5768138
Alignment:
Q  14 gaagcaaaaggttatcctatagcaacaaaaacaaagagtagcctgccatgaaaagcaaatggctgcacatacccctaaagaattctaatatgacatagca 113  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||| |||| || | |||| || ||| |||||||||||||||||  |||||||||    
T  5767963 gaagccaaaggctatcctatagcaacaaaaacaaagagtagcctgccataaaaaacacagggctacatatatccctaaagaattctaatcagacatagca 5768062  T
Q  114 actattatgcaaaatatatgagtatcaaaccttcctaattctataatcataaatatttgggattgattttgataaca 190  Q
      | |||||||||||| || ||||||||||||||||||| || |||| |  |||||||| ||||| |||| ||||||    
T  5768063 gatgttatgcaaaatacataagtatcaaaccttcctaatcctctaatta-caatatttgagattgttttttataaca 5768138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 14 - 190
Target Start/End: Original strand, 5771498 - 5771673
Alignment:
Q  14 gaagcaaaaggttatcctatagcaacaaaaacaaagagtagcctgccatgaaaagcaaatggctgcacatacccctaaagaattctaatatgacatagca 113  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||| |||| || | |||| || ||| |||||||||||||||||  |||||||||    
T  5771498 gaagccaaaggctatcctatagcaacaaaaacaaagagtagcctgccataaaaaacacagggctacatatatccctaaagaattctaatcagacatagca 5771597  T
Q  114 actattatgcaaaatatatgagtatcaaaccttcctaattctataatcataaatatttgggattgattttgataaca 190  Q
      | |||||||||||| || ||||||||||||||||||| || |||| |  |||||||| ||||| |||| ||||||    
T  5771598 gatgttatgcaaaatacataagtatcaaaccttcctaatcctctaatta-caatatttgagattgttttttataaca 5771673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 14 - 190
Target Start/End: Original strand, 5775033 - 5775208
Alignment:
Q  14 gaagcaaaaggttatcctatagcaacaaaaacaaagagtagcctgccatgaaaagcaaatggctgcacatacccctaaagaattctaatatgacatagca 113  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||| |||| || | |||| || ||| |||||||||||||||||  |||||||||    
T  5775033 gaagccaaaggctatcctatagcaacaaaaacaaagagtagcctgccataaaaaacacagggctacatatatccctaaagaattctaatcagacatagca 5775132  T
Q  114 actattatgcaaaatatatgagtatcaaaccttcctaattctataatcataaatatttgggattgattttgataaca 190  Q
      | |||||||||||| || ||||||||||||||||||| || |||| |  |||||||| ||||| |||| ||||||    
T  5775133 gatgttatgcaaaatacataagtatcaaaccttcctaatcctctaatta-caatatttgagattgttttttataaca 5775208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 14 - 190
Target Start/End: Original strand, 5778568 - 5778743
Alignment:
Q  14 gaagcaaaaggttatcctatagcaacaaaaacaaagagtagcctgccatgaaaagcaaatggctgcacatacccctaaagaattctaatatgacatagca 113  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||| |||| || | |||| || ||| |||||||||||||||||  |||||||||    
T  5778568 gaagccaaaggctatcctatagcaacaaaaacaaagagtagcctgccataaaaaacacagggctacatatatccctaaagaattctaatcagacatagca 5778667  T
Q  114 actattatgcaaaatatatgagtatcaaaccttcctaattctataatcataaatatttgggattgattttgataaca 190  Q
      | |||||||||||| || ||||||||||||||||||| || |||| |  |||||||| ||||| |||| ||||||    
T  5778668 gatgttatgcaaaatacataagtatcaaaccttcctaatcctctaatta-caatatttgagattgttttttataaca 5778743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 14 - 190
Target Start/End: Original strand, 5782103 - 5782278
Alignment:
Q  14 gaagcaaaaggttatcctatagcaacaaaaacaaagagtagcctgccatgaaaagcaaatggctgcacatacccctaaagaattctaatatgacatagca 113  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||| |||| || | |||| || ||| |||||||||||||||||  |||||||||    
T  5782103 gaagccaaaggctatcctatagcaacaaaaacaaagagtagcctgccataaaaaacacagggctacatatatccctaaagaattctaatcagacatagca 5782202  T
Q  114 actattatgcaaaatatatgagtatcaaaccttcctaattctataatcataaatatttgggattgattttgataaca 190  Q
      | |||||||||||| || ||||||||||||||||||| || |||| |  |||||||| ||||| |||| ||||||    
T  5782203 gatgttatgcaaaatacataagtatcaaaccttcctaatcctctaatta-caatatttgagattgttttttataaca 5782278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 14 - 190
Target Start/End: Original strand, 5785638 - 5785813
Alignment:
Q  14 gaagcaaaaggttatcctatagcaacaaaaacaaagagtagcctgccatgaaaagcaaatggctgcacatacccctaaagaattctaatatgacatagca 113  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||| |||| || | |||| || ||| |||||||||||||||||  |||||||||    
T  5785638 gaagccaaaggctatcctatagcaacaaaaacaaagagtagcctgccataaaaaacacagggctacatatatccctaaagaattctaatcagacatagca 5785737  T
Q  114 actattatgcaaaatatatgagtatcaaaccttcctaattctataatcataaatatttgggattgattttgataaca 190  Q
      | |||||||||||| || ||||||||||||||||||| || |||| |  |||||||| ||||| |||| ||||||    
T  5785738 gatgttatgcaaaatacataagtatcaaaccttcctaatcctctaatta-caatatttgagattgttttttataaca 5785813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 14 - 190
Target Start/End: Original strand, 5789173 - 5789348
Alignment:
Q  14 gaagcaaaaggttatcctatagcaacaaaaacaaagagtagcctgccatgaaaagcaaatggctgcacatacccctaaagaattctaatatgacatagca 113  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||| |||| || | |||| || ||| |||||||||||||||||  |||||||||    
T  5789173 gaagccaaaggctatcctatagcaacaaaaacaaagagtagcctgccataaaaaacacagggctacatatatccctaaagaattctaatcagacatagca 5789272  T
Q  114 actattatgcaaaatatatgagtatcaaaccttcctaattctataatcataaatatttgggattgattttgataaca 190  Q
      | |||||||||||| || ||||||||||||||||||| || |||| |  |||||||| ||||| |||| ||||||    
T  5789273 gatgttatgcaaaatacataagtatcaaaccttcctaatcctctaatta-caatatttgagattgttttttataaca 5789348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 14 - 190
Target Start/End: Original strand, 5792708 - 5792883
Alignment:
Q  14 gaagcaaaaggttatcctatagcaacaaaaacaaagagtagcctgccatgaaaagcaaatggctgcacatacccctaaagaattctaatatgacatagca 113  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||| |||| || | |||| || ||| |||||||||||||||||  |||||||||    
T  5792708 gaagccaaaggctatcctatagcaacaaaaacaaagagtagcctgccataaaaaacacagggctacatatatccctaaagaattctaatcagacatagca 5792807  T
Q  114 actattatgcaaaatatatgagtatcaaaccttcctaattctataatcataaatatttgggattgattttgataaca 190  Q
      | |||||||||||| || ||||||||||||||||||| || |||| |  |||||||| ||||| |||| ||||||    
T  5792808 gatgttatgcaaaatacataagtatcaaaccttcctaatcctctaatta-caatatttgagattgttttttataaca 5792883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 14 - 190
Target Start/End: Original strand, 5796243 - 5796418
Alignment:
Q  14 gaagcaaaaggttatcctatagcaacaaaaacaaagagtagcctgccatgaaaagcaaatggctgcacatacccctaaagaattctaatatgacatagca 113  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||| |||| || | |||| || ||| |||||||||||||||||  |||||||||    
T  5796243 gaagccaaaggctatcctatagcaacaaaaacaaagagtagcctgccataaaaaacacagggctacatatatccctaaagaattctaatcagacatagca 5796342  T
Q  114 actattatgcaaaatatatgagtatcaaaccttcctaattctataatcataaatatttgggattgattttgataaca 190  Q
      | |||||||||||| || ||||||||||||||||||| || |||| |  |||||||| ||||| |||| ||||||    
T  5796343 gatgttatgcaaaatacataagtatcaaaccttcctaatcctctaatta-caatatttgagattgttttttataaca 5796418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 14 - 190
Target Start/End: Original strand, 5799778 - 5799953
Alignment:
Q  14 gaagcaaaaggttatcctatagcaacaaaaacaaagagtagcctgccatgaaaagcaaatggctgcacatacccctaaagaattctaatatgacatagca 113  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||| |||| || | |||| || ||| |||||||||||||||||  |||||||||    
T  5799778 gaagccaaaggctatcctatagcaacaaaaacaaagagtagcctgccataaaaaacacagggctacatatatccctaaagaattctaatcagacatagca 5799877  T
Q  114 actattatgcaaaatatatgagtatcaaaccttcctaattctataatcataaatatttgggattgattttgataaca 190  Q
      | |||||||||||| || ||||||||||||||||||| || |||| |  |||||||| ||||| |||| ||||||    
T  5799878 gatgttatgcaaaatacataagtatcaaaccttcctaatcctctaatta-caatatttgagattgttttttataaca 5799953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 14 - 190
Target Start/End: Original strand, 5803313 - 5803488
Alignment:
Q  14 gaagcaaaaggttatcctatagcaacaaaaacaaagagtagcctgccatgaaaagcaaatggctgcacatacccctaaagaattctaatatgacatagca 113  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||| |||| || | |||| || ||| |||||||||||||||||  |||||||||    
T  5803313 gaagccaaaggctatcctatagcaacaaaaacaaagagtagcctgccataaaaaacacagggctacatatatccctaaagaattctaatcagacatagca 5803412  T
Q  114 actattatgcaaaatatatgagtatcaaaccttcctaattctataatcataaatatttgggattgattttgataaca 190  Q
      | |||||||||||| || ||||||||||||||||||| || |||| |  |||||||| ||||| |||| ||||||    
T  5803413 gatgttatgcaaaatacataagtatcaaaccttcctaatcctctaatta-caatatttgagattgttttttataaca 5803488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 14 - 190
Target Start/End: Original strand, 5806848 - 5807023
Alignment:
Q  14 gaagcaaaaggttatcctatagcaacaaaaacaaagagtagcctgccatgaaaagcaaatggctgcacatacccctaaagaattctaatatgacatagca 113  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||| |||| || | |||| || ||| |||||||||||||||||  |||||||||    
T  5806848 gaagccaaaggctatcctatagcaacaaaaacaaagagtagcctgccataaaaaacacagggctacatatatccctaaagaattctaatcagacatagca 5806947  T
Q  114 actattatgcaaaatatatgagtatcaaaccttcctaattctataatcataaatatttgggattgattttgataaca 190  Q
      | |||||||||||| || ||||||||||||||||||| || |||| |  |||||||| ||||| |||| ||||||    
T  5806948 gatgttatgcaaaatacataagtatcaaaccttcctaatcctctaatta-caatatttgagattgttttttataaca 5807023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 14 - 190
Target Start/End: Original strand, 5810383 - 5810558
Alignment:
Q  14 gaagcaaaaggttatcctatagcaacaaaaacaaagagtagcctgccatgaaaagcaaatggctgcacatacccctaaagaattctaatatgacatagca 113  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||| |||| || | |||| || ||| |||||||||||||||||  |||||||||    
T  5810383 gaagccaaaggctatcctatagcaacaaaaacaaagagtagcctgccataaaaaacacagggctacatatatccctaaagaattctaatcagacatagca 5810482  T
Q  114 actattatgcaaaatatatgagtatcaaaccttcctaattctataatcataaatatttgggattgattttgataaca 190  Q
      | |||||||||||| || ||||||||||||||||||| || |||| |  |||||||| ||||| |||| ||||||    
T  5810483 gatgttatgcaaaatacataagtatcaaaccttcctaatcctctaatta-caatatttgagattgttttttataaca 5810558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 14 - 190
Target Start/End: Original strand, 5813918 - 5814093
Alignment:
Q  14 gaagcaaaaggttatcctatagcaacaaaaacaaagagtagcctgccatgaaaagcaaatggctgcacatacccctaaagaattctaatatgacatagca 113  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||| |||| || | |||| || ||| |||||||||||||||||  |||||||||    
T  5813918 gaagccaaaggctatcctatagcaacaaaaacaaagagtagcctgccataaaaaacacagggctacatatatccctaaagaattctaatcagacatagca 5814017  T
Q  114 actattatgcaaaatatatgagtatcaaaccttcctaattctataatcataaatatttgggattgattttgataaca 190  Q
      | |||||||||||| || ||||||||||||||||||| || |||| |  |||||||| ||||| |||| ||||||    
T  5814018 gatgttatgcaaaatacataagtatcaaaccttcctaatcctctaatta-caatatttgagattgttttttataaca 5814093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 14 - 190
Target Start/End: Original strand, 5817453 - 5817628
Alignment:
Q  14 gaagcaaaaggttatcctatagcaacaaaaacaaagagtagcctgccatgaaaagcaaatggctgcacatacccctaaagaattctaatatgacatagca 113  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||| |||| || | |||| || ||| |||||||||||||||||  |||||||||    
T  5817453 gaagccaaaggctatcctatagcaacaaaaacaaagagtagcctgccataaaaaacacagggctacatatatccctaaagaattctaatcagacatagca 5817552  T
Q  114 actattatgcaaaatatatgagtatcaaaccttcctaattctataatcataaatatttgggattgattttgataaca 190  Q
      | |||||||||||| || ||||||||||||||||||| || |||| |  |||||||| ||||| |||| ||||||    
T  5817553 gatgttatgcaaaatacataagtatcaaaccttcctaatcctctaatta-caatatttgagattgttttttataaca 5817628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 190
Target Start/End: Complemental strand, 8859351 - 8859178
Alignment:
Q  14 gaagcaaaaggttatcctatagcaacaaaaacaaagagtagcctgccatgaaaagcaaatggctgcacatacccctaaagaattctaatatgacatagca 113  Q
    ||||| ||||| |||||||||| ||||||| ||||| ||||||| ||| |||| ||| | |||||||||| ||||||| ||| ||||||| || ||||||    
T  8859351 gaagccaaaggctatcctatagaaacaaaa-caaagtgtagcctaccaagaaa-gcatagggctgcacatgcccctaatgaaatctaataagatatagca 8859254  T
Q  114 actattatgcaaaatatatgagtatcaaaccttcctaattctataatcataaatatttgggattgattttgataaca 190  Q
     || |||||||||||| || |||||||||  |||||||| || ||||||  ||||| | |||||| |||||||||||    
T  8859253 tctgttatgcaaaataaataagtatcaaaatttcctaatcctctaatca-caatatctaggattgcttttgataaca 8859178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 26 - 162
Target Start/End: Complemental strand, 45212935 - 45212799
Alignment:
Q  26 tatcctatagcaacaaaaacaaagagtagcctgccatgaaaagcaaatggctgcacatacccctaaagaattctaatatgacatagcaactattatgcaa 125  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||| ||| |  ||||||  |||| |||||||||  | ||||||| || ||||||||    
T  45212935 tatcctatagcaacaaaaataaagagtaacctgccatgaaaagcaaagggccgtgcatacctttaaaaaattctaatcaggcatagcatctgttatgcaa 45212836  T
Q  126 aatatatgagtatcaaaccttcctaattctataatca 162  Q
    ||||||||||||||||||||||||||| || ||||||    
T  45212835 aatatatgagtatcaaaccttcctaatcctctaatca 45212799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 186
Target Start/End: Original strand, 21949820 - 21949921
Alignment:
Q  85 cccctaaagaattctaatatgacatagcaactattatgcaaaatatatgagtatcaaaccttcctaattctataatcataaatatttgggattgattttg 184  Q
    ||||||||||||||||||  ||||||| | |  || || | ||||| ||| ||||||| ||||||||| || |||||| ||||||||||||||| |||||    
T  21949820 cccctaaagaattctaatcagacatagtagcagttttgtagaatatttgaatatcaaatcttcctaatcctctaatcacaaatatttgggattgcttttg 21949919  T
Q  185 at 186  Q
    ||    
T  21949920 at 21949921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 14 - 186
Target Start/End: Complemental strand, 13129303 - 13129134
Alignment:
Q  14 gaagcaaaaggttatcctatagcaacaaaaacaaagagtagcctgccatgaaaagcaaatggctgcacatacccctaaagaattctaatatgacatagca 113  Q
    ||||| ||||| || ||||||||||||||| ||||| ||||||||||| |||| ||| | |||||||||| ||||||||||||||||||  || ||||||    
T  13129303 gaagccaaaggctaccctatagcaacaaaa-caaagtgtagcctgccaagaaa-gcatagggctgcacatgcccctaaagaattctaatcagatatagca 13129206  T
Q  114 actattatgcaaaatatatgagtatcaaaccttcctaattctataatcataaatatttgggattgattttgat 186  Q
     || |||||||||||| ||||||||||||  |||||||| || ||||||   |||||||||||||||||||||    
T  13129205 tctgttatgcaaaataaatgagtatcaaaatttcctaatcctctaatca-ccatatttgggattgattttgat 13129134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 29 - 186
Target Start/End: Complemental strand, 11084740 - 11084586
Alignment:
Q  29 cctatagcaacaaaaacaaagagtagcctgccatgaaaagcaaatggctgcacatacccctaaagaattctaatatgacatagcaactattatgcaaaat 128  Q
    ||||||||||||||| ||||| ||||||||||| |||| ||| | | |||||||| ||||||||||||||||||  || |||||| || |||||||||||    
T  11084740 cctatagcaacaaaa-caaagtgtagcctgccaagaaa-gcataggactgcacatgcccctaaagaattctaatcagatatagcatctgttatgcaaaat 11084643  T
Q  129 atatgagtatcaaaccttcctaattctataatcataaatatttgggattgattttgat 186  Q
    | ||||||||||||  |||||||| ||  |||||   |||||| ||||||||||||||    
T  11084642 agatgagtatcaaaatttcctaatcctccaatca-ccatatttaggattgattttgat 11084586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 142
Target Start/End: Complemental strand, 3526060 - 3525941
Alignment:
Q  21 aaggttatcctatagcaacaaaaacaaagagtagcctgccatgaaaagcaaatggctgcacatacccctaaagaattctaatatgacatagcaactatta 120  Q
    ||||||||||||||||||| ||||||||| ||| ||||||| | |||||| |  ||||||||| ||||||||||| ||||||   | ||||||  | |||    
T  3526060 aaggttatcctatagcaac-aaaacaaagtgtaacctgccaag-aaagcatagagctgcacatgcccctaaagaaatctaatcaaatatagcatatgtta 3525963  T
Q  121 tgcaaaatatatgagtatcaaa 142  Q
    ||||||||| ||||||||||||    
T  3525962 tgcaaaatagatgagtatcaaa 3525941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 113
Target Start/End: Complemental strand, 43699540 - 43699443
Alignment:
Q  14 gaagcaaaaggttatcctatagcaacaaaaacaaagagtagcctgccatgaaaagcaaatggctgcacatacccctaaagaattctaatatgacatagca 113  Q
    ||||| ||||| |||||||||||||||||| | ||| ||||| ||||| |||| ||| ||||||||||||  |||||||||||||||||| || ||||||    
T  43699540 gaagccaaaggctatcctatagcaacaaaa-ctaagtgtagcttgccaagaaa-gcatatggctgcacatgtccctaaagaattctaataagatatagca 43699443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 190
Target Start/End: Complemental strand, 27491998 - 27491825
Alignment:
Q  14 gaagcaaaaggttatcctatagcaacaaaaacaaagagtagcctgccatgaaaagcaaatggctgcacatacccctaaagaattctaatatgacatagca 113  Q
    ||||| ||||| |||||||||||||||||  ||||| ||||||| | | |||| ||| | ||||||||||  |  ||||||| ||||||  || ||||||    
T  27491998 gaagccaaaggctatcctatagcaacaaag-caaagtgtagcctactaagaaa-gcatagggctgcacatgtctttaaagaagtctaatcagatatagca 27491901  T
Q  114 actattatgcaaaatatatgagtatcaaaccttcctaattctataatcataaatatttgggattgattttgataaca 190  Q
     || |||||||||||| ||||||||||||  || ||||| || ||||||   ||||||||| ||| |||||||||||    
T  27491900 tctgttatgcaaaatagatgagtatcaaaattttctaatcctctaatca-ccatatttggggttgcttttgataaca 27491825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 186
Target Start/End: Original strand, 34106360 - 34106529
Alignment:
Q  14 gaagcaaaaggttatcctatagcaacaaaaacaaagagtagcctgccatgaaaagcaaatggctgcacatacccctaaagaattctaatatgacatagca 113  Q
    ||||| ||||| || |||||||||||||||  ||||  || ||||||| |||| ||| | || ||||||| ||| ||||||||||||||  || ||| ||    
T  34106360 gaagccaaaggctaccctatagcaacaaaat-aaagtataacctgccaagaaa-gcatagggttgcacatgcccttaaagaattctaatcagatataaca 34106457  T
Q  114 actattatgcaaaatatatgagtatcaaaccttcctaattctataatcataaatatttgggattgattttgat 186  Q
     || |||||||||||| |||||||| |||  ||| |||| || |||||    |||||||||||||||||||||    
T  34106458 tctgttatgcaaaatagatgagtataaaaaattcataatcctctaatc-cccatatttgggattgattttgat 34106529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 14 - 190
Target Start/End: Complemental strand, 2049198 - 2049026
Alignment:
Q  14 gaagcaaaaggttatcctatagcaacaaaaacaaagagtagcctgccatgaaaagcaaatggctgcacatacccctaaagaatt--ctaatatgacatag 111  Q
    ||||| ||||| ||||||||||||||||||     ||||||||||||||||||| | || |||| || ||||||||||||||||  |||||  |||||||    
T  2049198 gaagccaaaggctatcctatagcaacaaaac----gagtagcctgccatgaaaa-cgaagggctacatatacccctaaagaattttctaatcagacatag 2049104  T
Q  112 caactattatgcaaaatatatgagtatcaaaccttcctaattctataatcataaatatttgggattgattttgataaca 190  Q
    ||  | |||||||||||| |||||||||||||||||||||| || ||||||  |||||||||||||| |||||||||||    
T  2049103 cagatgttatgcaaaatacatgagtatcaaaccttcctaatcctctaatca-caatatttgggattgcttttgataaca 2049026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 20 - 186
Target Start/End: Complemental strand, 41310060 - 41309897
Alignment:
Q  20 aaaggttatcctatagcaacaaaaacaaagagtagcctgccatgaaaagcaaatggctgcacatacccctaaagaattctaatatgacatagcaactatt 119  Q
    ||||| || ||||||||||||||| ||||| ||||||||||| |||| ||| | |||||||||| ||||||||||||||||||  || |||||| || ||    
T  41310060 aaaggctaccctatagcaacaaaa-caaagtgtagcctgccaagaaa-gcatagggctgcacatgcccctaaagaattctaatcagatatagcatctgtt 41309963  T
Q  120 atgcaaaatatatgagtatcaaaccttcctaattctataatcataaatatttgggattgattttgat 186  Q
    |||||||||| ||||||||||||  |||||||| || ||||||   |||||||||||||||||||||    
T  41309962 atgcaaaatagatgagtatcaaaatttcctaatcctctaatca-ccatatttgggattgattttgat 41309897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 28 - 191
Target Start/End: Original strand, 15795933 - 15796092
Alignment:
Q  28 tcctatagcaacaaaaacaaagagtagcctgccatgaaaagcaaatggctgcacatacccctaaagaattctaatatgacatagcaactattatgcaaaa 127  Q
    |||||||||||||||| ||||| |||||||||||   |||||| | |||||||||| ||||||||||| ||||||  || ||| || ||||||||||| |    
T  15795933 tcctatagcaacaaaa-caaagtgtagcctgccag--aaagcatagggctgcacatgcccctaaagaaatctaatcagatataacatctattatgcaaca 15796029  T
Q  128 tatatgagtatcaaaccttcctaattctataatcataaatatttgggattgattttgataacat 191  Q
    || ||||||| | ||  |||||||| || |||||||  ||||||||||||| ||||||||||||    
T  15796030 tagatgagtaacgaaatttcctaatcctctaatcat-catatttgggattgcttttgataacat 15796092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 14 - 188
Target Start/End: Original strand, 40318469 - 40318639
Alignment:
Q  14 gaagcaaaaggttatcctatagcaacaaaaacaaagagtagcctgccatgaaaagcaaatggctgcacatacccctaaagaattctaatatgacatagca 113  Q
    ||||| ||||| |||||||||||||||||| ||||| ||||||||||| |||| ||| | || ||||||| ||  |||||||||| |||  || ||||||    
T  40318469 gaagccaaaggctatcctatagcaacaaaa-caaagtgtagcctgccaagaaa-gcatagggttgcacatgcct-taaagaattcaaatcagatatagca 40318565  T
Q  114 actattatgcaaaatatatgagtatcaaaccttcctaattctataatcataaatatttgggattgattttgataa 188  Q
     || |||||||||||| ||||||||||||  |||||||| || ||||||   ||||||||||||  |||||||||    
T  40318566 tctcttatgcaaaatagatgagtatcaaaatttcctaatcctctaatca-ccatatttgggattacttttgataa 40318639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 190
Target Start/End: Original strand, 2611803 - 2611976
Alignment:
Q  14 gaagcaaaaggttatcctatagcaacaaaaacaaagagtagcctgccatgaaaagcaaatggctgcacatacccctaaagaattctaatatgacatagca 113  Q
    ||||| ||||| ||||||| |||||||||| | ||||||||||||||| ||||| || ||||||||| ||  || ||||||||||||||  || ||||||    
T  2611803 gaagccaaaggctatcctaaagcaacaaaa-ctaagagtagcctgccaagaaaa-catatggctgcatatgtccttaaagaattctaatcagatatagca 2611900  T
Q  114 actattatgcaaaatatatgagtatcaaaccttcctaattctataatcataaatatttgggattgattttgataaca 190  Q
     || | | |||||| | |||| |||||||  |||||||| |  ||||||   ||||||| ||||| |||||||||||    
T  2611901 tctgtaaagcaaaaaagatgaatatcaaaatttcctaatccgctaatca-ccatatttgagattgcttttgataaca 2611976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 84 - 172
Target Start/End: Complemental strand, 39528537 - 39528449
Alignment:
Q  84 acccctaaagaattctaatatgacatagcaactattatgcaaaatatatgagtatcaaaccttcctaattctataatcataaatatttg 172  Q
    ||||||||| ||||||| |  ||||||||||| |||| | | |||||  |||||||||||||||||||| || |||||| |||||||||    
T  39528537 acccctaaaaaattctactgagacatagcaacaattacgtagaatattagagtatcaaaccttcctaatcctctaatcacaaatatttg 39528449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 40716124 - 40716072
Alignment:
Q  20 aaaggttatcctatagcaacaaaaacaaagagtagcctgccatgaaaagcaaa 72  Q
    |||||||||||| ||| ||||||||||||||| ||  || |||||||||||||    
T  40716124 aaaggttatcctgtagtaacaaaaacaaagagaaggttgtcatgaaaagcaaa 40716072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 191
Target Start/End: Original strand, 34466687 - 34466858
Alignment:
Q  14 gaagcaaaaggttatcctatagcaacaaaaacaaagagtagcctgccatgaaaagcaaatggctgcacatacccctaaagaattctaatatgacatagca 113  Q
    ||||| ||||| ||||||||| |||||||||    | ||||||||| |||||| ||| |  ||||||||| ||||||||||| ||||||  || ||||||    
T  34466687 gaagccaaaggctatcctataacaacaaaaa----gtgtagcctgctatgaaa-gcatagagctgcacatgcccctaaagaaatctaattagatatagca 34466781  T
Q  114 actattatgcaaaatatatgagtatcaaaccttcctaattctataatcataaatatttgggattgattttgataacat 191  Q
     || |||||||||||| ||||||||||||  |||||||| || ||||||   ||||||||||||| ||||||||||||    
T  34466782 tctgttatgcaaaatagatgagtatcaaaatttcctaatcctctaatca-ccatatttgggattgcttttgataacat 34466858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 102
Target Start/End: Original strand, 3847741 - 3847822
Alignment:
Q  21 aaggttatcctatagcaacaaaaacaaagagtagcctgccatgaaaagcaaatggctgcacatacccctaaagaattctaat 102  Q
    |||| |||||||||||||||||||| || || || || |||||||||||||| || |||||||||||||||| |||| ||||    
T  3847741 aaggctatcctatagcaacaaaaacgaaaaggagtctaccatgaaaagcaaagggttgcacatacccctaaaaaattataat 3847822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 96 - 183
Target Start/End: Original strand, 3848221 - 3848308
Alignment:
Q  96 ttctaatatgacatagcaactattatgcaaaatatatgagtatcaaaccttcctaattctataatcataaatatttgggattgatttt 183  Q
    ||||| || |||||| ||||  ||||||| |||||||||||||||||| ||||||||  | ||||||||||||||| |||||| ||||    
T  3848221 ttctagtaagacataacaacggttatgcagaatatatgagtatcaaactttcctaatcatctaatcataaatatttaggattgttttt 3848308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 102
Target Start/End: Original strand, 51499727 - 51499808
Alignment:
Q  21 aaggttatcctatagcaacaaaaacaaagagtagcctgccatgaaaagcaaatggctgcaca-tacccctaaagaattctaat 102  Q
    |||| |||||| || |||||||||||||||| |||||||||| ||||||||| ||||||| |  |||||||||||||||||||    
T  51499727 aaggctatcctttatcaacaaaaacaaagaggagcctgccat-aaaagcaaagggctgcaaacaacccctaaagaattctaat 51499808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 36 - 186
Target Start/End: Complemental strand, 33417625 - 33417477
Alignment:
Q  36 caacaaaaacaaagagtagcctgccatgaaaagcaaatggctgca--catacccctaaagaattctaatatgacatagcaactattatgcaaaatatatg 133  Q
    |||||||||||||||| || ||||||| ||||||||| ||| | |  || |||||||||||||||||||  |||||| ||    |||||||||| |||||    
T  33417625 caacaaaaacaaagaggagtctgccat-aaaagcaaagggccgaaaacaaacccctaaagaattctaatcagacataacag---ttatgcaaaaaatatg 33417530  T
Q  134 agtatcaaaccttcctaattctataatcataaatatttgggattgattttgat 186  Q
    ||||||||||| ||||||| || |||||| |||||||| |||||  |||||||    
T  33417529 agtatcaaaccatcctaatcctctaatcacaaatatttaggattacttttgat 33417477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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