View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12966_low_9 (Length: 234)

Name: NF12966_low_9
Description: NF12966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12966_low_9
NF12966_low_9
[»] chr7 (25 HSPs)
chr7 (1-119)||(49094730-49094850)
chr7 (135-216)||(49095401-49095482)
chr7 (1-83)||(48395245-48395325)
chr7 (1-80)||(7212657-7212738)
chr7 (1-82)||(2849513-2849594)
chr7 (1-80)||(6892627-6892704)
chr7 (1-80)||(48314355-48314432)
chr7 (1-83)||(8352771-8352851)
chr7 (1-79)||(17909044-17909120)
chr7 (24-80)||(6427210-6427266)
chr7 (33-81)||(40231730-40231777)
chr7 (5-76)||(47925341-47925410)
chr7 (1-75)||(22588955-22589027)
chr7 (1-75)||(24957185-24957257)
chr7 (1-54)||(27306019-27306070)
chr7 (11-84)||(37385238-37385308)
chr7 (24-81)||(2008873-2008930)
chr7 (1-81)||(11813344-11813422)
chr7 (12-80)||(34978296-34978362)
chr7 (3-82)||(47448824-47448902)
chr7 (43-91)||(2469692-2469740)
chr7 (35-83)||(11751166-11751214)
chr7 (11-82)||(12007190-12007259)
chr7 (12-80)||(36352590-36352658)
chr7 (40-80)||(49069249-49069289)
[»] chr8 (18 HSPs)
chr8 (1-84)||(30170723-30170804)
chr8 (4-82)||(26629107-26629183)
chr8 (1-82)||(13592764-13592843)
chr8 (24-83)||(2730976-2731035)
chr8 (25-80)||(8835886-8835941)
chr8 (23-84)||(5771890-5771951)
chr8 (24-84)||(1068602-1068662)
chr8 (28-84)||(5771991-5772047)
chr8 (1-76)||(37379428-37379501)
chr8 (15-89)||(6511868-6511940)
chr8 (43-82)||(18538384-18538423)
chr8 (5-74)||(14127250-14127317)
chr8 (22-84)||(36023080-36023142)
chr8 (24-82)||(43066609-43066667)
chr8 (43-84)||(7678728-7678769)
chr8 (43-84)||(40413372-40413413)
chr8 (42-82)||(5740807-5740847)
chr8 (36-80)||(21526308-21526352)
[»] chr6 (24 HSPs)
chr6 (1-77)||(13093629-13093705)
chr6 (24-76)||(10840722-10840774)
chr6 (1-84)||(20029257-20029338)
chr6 (34-82)||(31883329-31883377)
chr6 (1-84)||(33683496-33683577)
chr6 (34-84)||(30423620-30423670)
chr6 (12-84)||(17551384-17551454)
chr6 (1-83)||(38593-38673)
chr6 (43-82)||(1196056-1196095)
chr6 (24-83)||(8505789-8505848)
chr6 (43-85)||(12441533-12441575)
chr6 (34-80)||(18065115-18065161)
chr6 (1-81)||(25109043-25109120)
chr6 (43-85)||(32853178-32853220)
chr6 (12-84)||(2242027-2242097)
chr6 (12-84)||(8645305-8645374)
chr6 (39-84)||(27334854-27334899)
chr6 (39-84)||(27395594-27395639)
chr6 (43-83)||(3180026-3180066)
chr6 (24-80)||(11635550-11635606)
chr6 (33-81)||(22573447-22573495)
chr6 (1-84)||(31204804-31204885)
chr6 (42-82)||(31517202-31517242)
chr6 (24-80)||(33712320-33712376)
[»] chr5 (23 HSPs)
chr5 (1-80)||(8728573-8728652)
chr5 (1-82)||(30838359-30838438)
chr5 (1-80)||(2629818-2629897)
chr5 (1-80)||(4800492-4800573)
chr5 (12-83)||(611861-611930)
chr5 (1-81)||(43057434-43057512)
chr5 (1-80)||(41621922-41621999)
chr5 (24-82)||(11148509-11148567)
chr5 (4-80)||(35570813-35570887)
chr5 (26-82)||(14780438-14780494)
chr5 (1-80)||(26754632-26754709)
chr5 (42-86)||(34428154-34428198)
chr5 (1-83)||(35165676-35165759)
chr5 (42-84)||(125088-125130)
chr5 (4-58)||(15022237-15022291)
chr5 (40-86)||(19844340-19844386)
chr5 (23-81)||(42446305-42446363)
chr5 (39-80)||(15918020-15918061)
chr5 (42-83)||(29803222-29803263)
chr5 (24-80)||(3109602-3109658)
chr5 (24-80)||(4719650-4719706)
chr5 (24-80)||(11306698-11306753)
chr5 (12-80)||(29462993-29463061)
[»] chr2 (33 HSPs)
chr2 (1-80)||(25507255-25507334)
chr2 (1-81)||(13453949-13454027)
chr2 (1-84)||(22966782-22966863)
chr2 (1-80)||(31629604-31629681)
chr2 (4-80)||(45376214-45376292)
chr2 (1-83)||(29472025-29472104)
chr2 (1-81)||(31227546-31227622)
chr2 (1-82)||(9979094-9979173)
chr2 (1-81)||(40106608-40106686)
chr2 (24-80)||(24727605-24727661)
chr2 (24-83)||(41661330-41661389)
chr2 (24-83)||(44050012-44050071)
chr2 (12-81)||(7258567-7258634)
chr2 (1-84)||(28481777-28481856)
chr2 (34-84)||(39147761-39147811)
chr2 (43-84)||(19695714-19695755)
chr2 (33-81)||(31415239-31415287)
chr2 (11-84)||(27307236-27307306)
chr2 (36-81)||(4036903-4036948)
chr2 (4-80)||(15123933-15124007)
chr2 (41-82)||(29871384-29871425)
chr2 (35-84)||(37731226-37731275)
chr2 (24-81)||(37767781-37767838)
chr2 (24-81)||(43820756-43820813)
chr2 (34-86)||(5054196-5054248)
chr2 (34-82)||(5427248-5427296)
chr2 (40-80)||(11965793-11965833)
chr2 (24-80)||(15260307-15260363)
chr2 (1-56)||(15610826-15610879)
chr2 (40-84)||(18531597-18531641)
chr2 (28-80)||(22303203-22303254)
chr2 (1-80)||(28544031-28544108)
chr2 (43-79)||(39285854-39285890)
[»] chr3 (22 HSPs)
chr3 (5-82)||(47187518-47187593)
chr3 (12-84)||(50559217-50559287)
chr3 (1-83)||(31143267-31143347)
chr3 (1-82)||(19623246-19623325)
chr3 (1-81)||(27718780-27718858)
chr3 (1-68)||(6976942-6977007)
chr3 (1-80)||(9326979-9327056)
chr3 (23-83)||(38017941-38018001)
chr3 (1-77)||(11323912-11323984)
chr3 (12-82)||(48405408-48405476)
chr3 (12-81)||(19150324-19150391)
chr3 (26-80)||(39284684-39284738)
chr3 (23-80)||(25188479-25188536)
chr3 (24-81)||(41448191-41448248)
chr3 (2-78)||(41850945-41851019)
chr3 (42-83)||(45528975-45529016)
chr3 (24-80)||(5393849-5393905)
chr3 (24-76)||(39629854-39629906)
chr3 (9-84)||(39901587-39901660)
chr3 (40-84)||(41443222-41443266)
chr3 (40-84)||(52454125-52454169)
chr3 (39-87)||(53473603-53473651)
[»] chr1 (20 HSPs)
chr1 (1-82)||(35883601-35883680)
chr1 (1-82)||(12021930-12022008)
chr1 (1-84)||(42577468-42577551)
chr1 (1-79)||(1523288-1523364)
chr1 (24-79)||(1922440-1922495)
chr1 (12-85)||(48858818-48858889)
chr1 (24-84)||(27742613-27742673)
chr1 (1-79)||(40809498-40809571)
chr1 (43-82)||(37843466-37843505)
chr1 (47-82)||(39788765-39788800)
chr1 (28-82)||(33694220-33694274)
chr1 (24-81)||(17082758-17082815)
chr1 (34-83)||(35196130-35196178)
chr1 (1-30)||(43891763-43891792)
chr1 (11-83)||(48983672-48983742)
chr1 (5-77)||(51231304-51231374)
chr1 (43-83)||(4154589-4154629)
chr1 (42-82)||(16987445-16987485)
chr1 (4-56)||(17777466-17777517)
chr1 (24-80)||(49931553-49931609)
[»] chr4 (31 HSPs)
chr4 (1-83)||(35206165-35206245)
chr4 (5-84)||(961272-961349)
chr4 (34-82)||(50831781-50831829)
chr4 (1-80)||(56215605-56215682)
chr4 (1-77)||(13140297-13140369)
chr4 (34-83)||(20760252-20760301)
chr4 (34-83)||(20766643-20766692)
chr4 (3-83)||(42815401-42815479)
chr4 (42-87)||(51296222-51296267)
chr4 (1-77)||(53190929-53191006)
chr4 (12-83)||(38864741-38864810)
chr4 (24-79)||(17367446-17367501)
chr4 (12-82)||(50890079-50890146)
chr4 (3-80)||(3078904-3078979)
chr4 (11-80)||(9032780-9032846)
chr4 (1-82)||(12593606-12593685)
chr4 (43-81)||(42915253-42915291)
chr4 (11-83)||(3222986-3223055)
chr4 (12-80)||(5932769-5932835)
chr4 (1-81)||(10762496-10762574)
chr4 (42-83)||(44272843-44272884)
chr4 (39-84)||(44368232-44368277)
chr4 (12-84)||(54000694-54000764)
chr4 (40-84)||(7632493-7632537)
chr4 (41-81)||(15638160-15638200)
chr4 (35-83)||(25221749-25221797)
chr4 (12-83)||(31221410-31221478)
chr4 (24-80)||(40693638-40693694)
chr4 (42-82)||(42853937-42853977)
chr4 (1-56)||(45652665-45652718)
chr4 (11-82)||(51255744-51255813)
[»] scaffold1625 (1 HSPs)
scaffold1625 (5-82)||(779-854)
[»] scaffold0128 (1 HSPs)
scaffold0128 (12-84)||(10932-11002)
[»] scaffold0178 (1 HSPs)
scaffold0178 (1-68)||(11547-11612)
[»] scaffold0036 (1 HSPs)
scaffold0036 (12-84)||(18000-18069)
[»] scaffold0086 (1 HSPs)
scaffold0086 (27-79)||(15849-15901)


Alignment Details
Target: chr7 (Bit Score: 102; Significance: 9e-51; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 49094730 - 49094850
Alignment:
Q  1 aataaaaacacatgtaagtatgagagagagaggg--ttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctcttttgataacactctttt 98  Q
    ||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  49094730 aataaaaacacatgtaagtgtgagagagagagggagttgttacaaaagttgtcaaaaagtaattgtacatgtatcatttctcttttgataacactctttt 49094829  T
Q  99 tggaacgtgtttgcactttcc 119  Q
    |||||||||||||||||||||    
T  49094830 tggaacgtgtttgcactttcc 49094850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 135 - 216
Target Start/End: Original strand, 49095401 - 49095482
Alignment:
Q  135 ttaagttatataaataaaccattaaacaaattaaaattccaaatatattttggaaattatctccaacgataaatagataaat 216  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49095401 ttaagttatataaataaaccattacacaaattaaaattccaaatatattttggaaattatctccaacgataaatagataaat 49095482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 48395325 - 48395245
Alignment:
Q  1 aataaaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctcttt 83  Q
    |||||||||| |||| ||||| ||||||||||  ||||| ||||||||||||||||||  |||||||| ||||||||||||||    
T  48395325 aataaaaacatatgtgagtataagagagagag--ttgtttcaaaagttgtcaaaaagtggttgtacaaatatcatttctcttt 48395245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 7212657 - 7212738
Alignment:
Q  1 aataaaaacacatgtaagtatgagagagagagg--gttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctc 80  Q
    ||||||||||||||| ||||||||||||||||   ||||||  ||||||||| |||||||| |||||||| |||||||||||    
T  7212657 aataaaaacacatgtgagtatgagagagagagaaagttgttttaaaagttgtgaaaaagtagttgtacaaatatcatttctc 7212738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 2849513 - 2849594
Alignment:
Q  1 aataaaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctctt 82  Q
    ||||||| ||||||| |||  ||||||||||| ||| || |||||||| ||||||| ||||||||||| |||||||||||||    
T  2849513 aataaaatcacatgtgagtcagagagagagagagttatttcaaaagttatcaaaaaataattgtacaaatatcatttctctt 2849594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 6892627 - 6892704
Alignment:
Q  1 aataaaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctc 80  Q
    ||||||||||||||| |||||||||  |||||||||||| || ||||||||||| |||  |||||||| |||||||||||    
T  6892627 aataaaaacacatgtgagtatgaga--gagagggttgtttcataagttgtcaaagagtggttgtacaaatatcatttctc 6892704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 48314355 - 48314432
Alignment:
Q  1 aataaaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctc 80  Q
    ||||||||| |||||||||||||||  ||||||||||||  ||||||||| |||||||  |||||||| |||||||||||    
T  48314355 aataaaaactcatgtaagtatgaga--gagagggttgttgtaaaagttgttaaaaagtggttgtacaaatatcatttctc 48314432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 8352851 - 8352771
Alignment:
Q  1 aataaaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctcttt 83  Q
    ||||||| |||||||||||||||||||||   ||||||| ||||| ||||||||||||  ||||| || ||||||||||||||    
T  8352851 aataaaagcacatgtaagtatgagagagat--ggttgtttcaaaaattgtcaaaaagtggttgtataaatatcatttctcttt 8352771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 17909044 - 17909120
Alignment:
Q  1 aataaaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttct 79  Q
    ||||||||||||||| |||| ||||  ||||||||| || |||||||||||||||| | ||||||||| ||| ||||||    
T  17909044 aataaaaacacatgtgagtacgaga--gagagggttatttcaaaagttgtcaaaaaatgattgtacaaatattatttct 17909120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 6427266 - 6427210
Alignment:
Q  24 gagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctc 80  Q
    ||||||||||||||||  |||||||||||||||||  ||||| || |||||||||||    
T  6427266 gagagagagggttgttctaaaagttgtcaaaaagtggttgtataaatatcatttctc 6427210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 40231730 - 40231777
Alignment:
Q  33 ggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctct 81  Q
    |||||| ||||||||||||||||| ||||||||||| ||||||||||||    
T  40231730 ggttgtcacaaaagttgtcaaaaa-taattgtacaaatatcatttctct 40231777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 47925410 - 47925341
Alignment:
Q  5 aaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatt 76  Q
    ||||||||||| ||||||||||||||  ||||||| |||||||||| ||| |||  |||||||| |||||||    
T  47925410 aaaacacatgtgagtatgagagagag--ggttgttccaaaagttgttaaagagtggttgtacaaatatcatt 47925341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 22588955 - 22589027
Alignment:
Q  1 aataaaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcat 75  Q
    ||||||| ||||||| |||||||||||| |  ||||||| |||||||||||||||| |  |||||||| ||||||    
T  22588955 aataaaagcacatgtgagtatgagagaggg--ggttgtttcaaaagttgtcaaaaaatggttgtacaaatatcat 22589027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 24957185 - 24957257
Alignment:
Q  1 aataaaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcat 75  Q
    ||||||||||||||| |||||  |||||||||||||||  ||||| ||||||||||||  ||||| || ||||||    
T  24957185 aataaaaacacatgtgagtat--gagagagagggttgtgccaaaaattgtcaaaaagtggttgtataaatatcat 24957257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 27306019 - 27306070
Alignment:
Q  1 aataaaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaa 54  Q
    ||||||||||||||| |||||  |||||||||| ||||| ||||||||||||||    
T  27306019 aataaaaacacatgtgagtat--gagagagaggattgtttcaaaagttgtcaaa 27306070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 84
Target Start/End: Original strand, 37385238 - 37385308
Alignment:
Q  11 catgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctctttt 84  Q
    ||||| ||||||||||||| ||  |||| ||||||||||||||||| || |||||||| |||||||| ||||||    
T  37385238 catgtgagtatgagagagaaag--ttgt-acaaaagttgtcaaaaaatagttgtacaaatatcatttatctttt 37385308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 2008873 - 2008930
Alignment:
Q  24 gagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctct 81  Q
    ||||||||  ||||| |||||||||||||||||||  |||| ||| ||||||||||||    
T  2008873 gagagagaaagttgtcacaaaagttgtcaaaaagtggttgttcaaatatcatttctct 2008930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 11813422 - 11813344
Alignment:
Q  1 aataaaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctct 81  Q
    ||||||||||||||| |||||||  |||| || ||||||  ||||||||| ||||||||  ||||||| ||| ||||||||    
T  11813422 aataaaaacacatgtgagtatga--gagaaagtgttgtttaaaaagttgttaaaaagtaggtgtacaaatattatttctct 11813344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 34978362 - 34978296
Alignment:
Q  12 atgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctc 80  Q
    |||| ||||||||||||| ||  |||| |||||| |||||||||||| ||||| ||| |||||||||||    
T  34978362 atgtgagtatgagagagaaag--ttgtcacaaaaattgtcaaaaagtgattgttcaaatatcatttctc 34978296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 47448902 - 47448824
Alignment:
Q  3 taaaaacaca-tgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctctt 82  Q
    |||||||||| ||| ||||||||||||| ||  |||| ||||||||||||||||| |  |||| ||| |||||||||||||    
T  47448902 taaaaacacaatgtgagtatgagagagaaag--ttgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctctt 47448824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 2469740 - 2469692
Alignment:
Q  43 aaagttgtcaaaaagtaattgtacaagtatcatttctcttttgataaca 91  Q
    |||||||||| |||||  |||||||| ||||||||||||||||| ||||    
T  2469740 aaagttgtcacaaagtggttgtacaaatatcatttctcttttgaaaaca 2469692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 11751166 - 11751214
Alignment:
Q  35 ttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctcttt 83  Q
    |||||||||||||||||| ||| ||||||||||| ||| |||| |||||    
T  11751166 ttgttacaaaagttgtcacaaaataattgtacaaatataatttttcttt 11751214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 12007190 - 12007259
Alignment:
Q  11 catgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctctt 82  Q
    ||||| ||||||||||||| ||  |||| ||||||||||||||||| |  |||| ||| |||||||||||||    
T  12007190 catgtgagtatgagagagaaag--ttgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctctt 12007259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 36352590 - 36352658
Alignment:
Q  12 atgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctc 80  Q
    ||||||||||||||||||||  ||||| ||||||||||| | ||| |  |||||||  |||||||||||    
T  36352590 atgtaagtatgagagagagaaagttgtcacaaaagttgttacaaaatggttgtacatatatcatttctc 36352658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 49069289 - 49069249
Alignment:
Q  40 acaaaagttgtcaaaaagtaattgtacaagtatcatttctc 80  Q
    |||||||||||||||||||  |||||||| |||||||||||    
T  49069289 acaaaagttgtcaaaaagtggttgtacaaatatcatttctc 49069249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 30170723 - 30170804
Alignment:
Q  1 aataaaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctctttt 84  Q
    ||||||||||||||| |||||||||||||   ||||||| ||||||||||||||||||  |||||||| |||||||||||||||    
T  30170723 aataaaaacacatgtgagtatgagagagat--ggttgtttcaaaagttgtcaaaaagtggttgtacaaatatcatttctctttt 30170804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 26629107 - 26629183
Alignment:
Q  4 aaaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctctt 82  Q
    ||||| |||||| |||||||||  |||||||||||| ||||||||||||||||||  |||||||| |||||||||||||    
T  26629107 aaaaaaacatgtgagtatgaga--gagagggttgtttcaaaagttgtcaaaaagtggttgtacaaatatcatttctctt 26629183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 13592843 - 13592764
Alignment:
Q  1 aataaaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctctt 82  Q
    ||||||||||||||| ||||||||||| ||||  ||||| |||||||||||||||| ||  ||||||| |||||||||||||    
T  13592843 aataaaaacacatgtgagtatgagagatagag--ttgtttcaaaagttgtcaaaaaataggtgtacaaatatcatttctctt 13592764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 83
Target Start/End: Original strand, 2730976 - 2731035
Alignment:
Q  24 gagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctcttt 83  Q
    ||||||||  |||||||||||||||||||||||||  |||| ||| ||||||||||||||    
T  2730976 gagagagaaagttgttacaaaagttgtcaaaaagtggttgttcaaatatcatttctcttt 2731035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 8835886 - 8835941
Alignment:
Q  25 agagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctc 80  Q
    |||||||||||||||  ||||||||||||||||| || |||||| |||||||||||    
T  8835886 agagagagggttgttttaaaagttgtcaaaaagtgatcgtacaaatatcatttctc 8835941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 5771890 - 5771951
Alignment:
Q  23 agagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctctttt 84  Q
    |||||||||| ||||||||||||||||||| ||| |  |||| ||| |||||||||||||||    
T  5771890 agagagagagagttgttacaaaagttgtcacaaaatggttgttcaaatatcatttctctttt 5771951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 84
Target Start/End: Complemental strand, 1068662 - 1068602
Alignment:
Q  24 gagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctctttt 84  Q
    ||||||||  ||||| |||||||||||||||||||  |||| ||| |||||||||||||||    
T  1068662 gagagagaaagttgtcacaaaagttgtcaaaaagtggttgttcaaatatcatttctctttt 1068602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 5771991 - 5772047
Alignment:
Q  28 gagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctctttt 84  Q
    ||||| ||||||||||||||||||||||| |  |||| ||| |||||||||||||||    
T  5771991 gagagagttgttacaaaagttgtcaaaaaatggttgttcaaatatcatttctctttt 5772047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 37379428 - 37379501
Alignment:
Q  1 aataaaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatt 76  Q
    ||||||| ||||||| |||||||||||||   ||||||| ||||||||||||||||||  || ||||| |||||||    
T  37379428 aataaaagcacatgtgagtatgagagagat--ggttgtttcaaaagttgtcaaaaagtggttctacaaatatcatt 37379501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 6511868 - 6511940
Alignment:
Q  15 taagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctcttttgataa 89  Q
    ||||||||||||||| ||  || | |||||| || ||||||||| |||||| || ||||||||||||||||||||    
T  6511868 taagtatgagagagaaag--ttatcacaaaatttatcaaaaagtgattgtataaatatcatttctcttttgataa 6511940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 82
Target Start/End: Complemental strand, 18538423 - 18538384
Alignment:
Q  43 aaagttgtcaaaaagtaattgtacaagtatcatttctctt 82  Q
    ||||||||||||||||  ||||||||||||||||||||||    
T  18538423 aaagttgtcaaaaagtggttgtacaagtatcatttctctt 18538384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 14127317 - 14127250
Alignment:
Q  5 aaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatca 74  Q
    ||||||||||| |||||||||||||   ||||||| ||||| ||||||||||||  |||||||| |||||    
T  14127317 aaaacacatgtgagtatgagagagat--ggttgttccaaaaattgtcaaaaagtggttgtacaaatatca 14127250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 36023142 - 36023080
Alignment:
Q  22 gagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctctttt 84  Q
    ||||||||||| ||||| || ||| |||| ||||| ||||||| ||| |||||||||||||||    
T  36023142 gagagagagagagttgtcaccaaaattgttaaaaaataattgttcaaatatcatttctctttt 36023080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 43066609 - 43066667
Alignment:
Q  24 gagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctctt 82  Q
    |||||||| | ||||| |||||||||| |||||||  |||||||| |||||||||||||    
T  43066609 gagagagatgattgtttcaaaagttgttaaaaagtggttgtacaaatatcatttctctt 43066667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 7678769 - 7678728
Alignment:
Q  43 aaagttgtcaaaaagtaattgtacaagtatcatttctctttt 84  Q
    ||||||||||||||||  |||||||| |||||||||||||||    
T  7678769 aaagttgtcaaaaagtggttgtacaaatatcatttctctttt 7678728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 84
Target Start/End: Original strand, 40413372 - 40413413
Alignment:
Q  43 aaagttgtcaaaaagtaattgtacaagtatcatttctctttt 84  Q
    |||||||||| ||| ||||||||||| |||||||||||||||    
T  40413372 aaagttgtcacaaaataattgtacaaatatcatttctctttt 40413413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 82
Target Start/End: Original strand, 5740807 - 5740847
Alignment:
Q  42 aaaagttgtcaaaaagtaattgtacaagtatcatttctctt 82  Q
    |||||||||||||||||  |||||||| |||||||||||||    
T  5740807 aaaagttgtcaaaaagtggttgtacaaatatcatttctctt 5740847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 21526308 - 21526352
Alignment:
Q  36 tgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctc 80  Q
    ||||||||||||||| |||||||  |||||||| |||||||||||    
T  21526308 tgttacaaaagttgttaaaaagtggttgtacaaatatcatttctc 21526352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 13093705 - 13093629
Alignment:
Q  1 aataaaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcattt 77  Q
    ||||||||||||| | |||||||||||||||| |||||| ||||||||||||||||||  |||||||| ||||||||    
T  13093705 aataaaaacacatatgagtatgagagagagagagttgtttcaaaagttgtcaaaaagtggttgtacaaatatcattt 13093629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 10840774 - 10840722
Alignment:
Q  24 gagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatt 76  Q
    |||||||||| ||||| |||||||||||||||| ||||||||||| |||||||    
T  10840774 gagagagaggattgttccaaaagttgtcaaaaaataattgtacaaatatcatt 10840722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 20029338 - 20029257
Alignment:
Q  1 aataaaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctctttt 84  Q
    ||||||||||||||| |||||||||  |||| ||||||| |||||||||| |||||||  ||||| || |||||||| ||||||    
T  20029338 aataaaaacacatgtgagtatgaga--gagaaggttgtttcaaaagttgttaaaaagtggttgtataaatatcatttttctttt 20029257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 31883329 - 31883377
Alignment:
Q  34 gttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctctt 82  Q
    |||||||||||||||||||||||||  |||||||| |||||||||||||    
T  31883329 gttgttacaaaagttgtcaaaaagtggttgtacaaatatcatttctctt 31883377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 33683577 - 33683496
Alignment:
Q  1 aataaaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctctttt 84  Q
    ||||||||||||||| ||||||||||||||  ||| ||| |||||||||||||||| ||| | || || |||||||| ||||||    
T  33683577 aataaaaacacatgtgagtatgagagagag--ggtagtttcaaaagttgtcaaaaaataaatatataaatatcatttatctttt 33683496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 34 - 84
Target Start/End: Original strand, 30423620 - 30423670
Alignment:
Q  34 gttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctctttt 84  Q
    ||||||||||||| ||||||||| ||||||| ||| |||||||||||||||    
T  30423620 gttgttacaaaagctgtcaaaaaataattgttcaaatatcatttctctttt 30423670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 17551384 - 17551454
Alignment:
Q  12 atgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctctttt 84  Q
    |||| ||||||||||||| ||  |||||||||||||||||||||| |  |||| ||| |||||||||||||||    
T  17551384 atgtgagtatgagagagaaag--ttgttacaaaagttgtcaaaaaatggttgttcaaatatcatttctctttt 17551454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 38673 - 38593
Alignment:
Q  1 aataaaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctcttt 83  Q
    |||||||| |||||| ||||||||||||||  ||||||| | |||||||||||||  |  |||||||| ||||||||| ||||    
T  38673 aataaaaatacatgtgagtatgagagagag--ggttgtttccaaagttgtcaaaatttggttgtacaaatatcatttcccttt 38593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 82
Target Start/End: Complemental strand, 1196095 - 1196056
Alignment:
Q  43 aaagttgtcaaaaagtaattgtacaagtatcatttctctt 82  Q
    |||||||||||||||| ||||||||| |||||||||||||    
T  1196095 aaagttgtcaaaaagtgattgtacaaatatcatttctctt 1196056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 83
Target Start/End: Original strand, 8505789 - 8505848
Alignment:
Q  24 gagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctcttt 83  Q
    ||||||||  ||||| ||||||||||||||||| | ||||| ||| ||||||||||||||    
T  8505789 gagagagaaagttgtcacaaaagttgtcaaaaaatgattgttcaaatatcatttctcttt 8505848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 85
Target Start/End: Complemental strand, 12441575 - 12441533
Alignment:
Q  43 aaagttgtcaaaaagtaattgtacaagtatcatttctcttttg 85  Q
    |||||||||| |||||| |||||||| ||||||||||||||||    
T  12441575 aaagttgtcacaaagtagttgtacaaatatcatttctcttttg 12441533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 18065115 - 18065161
Alignment:
Q  34 gttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctc 80  Q
    ||||| ||||||||||||||||||| ||||| ||| |||||||||||    
T  18065115 gttgtcacaaaagttgtcaaaaagtgattgttcaaatatcatttctc 18065161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 25109120 - 25109043
Alignment:
Q  1 aataaaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctct 81  Q
    ||||||||||||||| |||||||||||||||   ||||  | |||||||||||||  ||| ||||||| |||| |||||||    
T  25109120 aataaaaacacatgtgagtatgagagagaga---ttgtctctaaagttgtcaaaatttaactgtacaaatatcgtttctct 25109043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 85
Target Start/End: Original strand, 32853178 - 32853220
Alignment:
Q  43 aaagttgtcaaaaagtaattgtacaagtatcatttctcttttg 85  Q
    |||||||||||||||| ||||||||| ||| ||||||||||||    
T  32853178 aaagttgtcaaaaagtgattgtacaaatataatttctcttttg 32853220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 2242027 - 2242097
Alignment:
Q  12 atgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctctttt 84  Q
    |||| ||||||||||||| ||  |||| |||||| |||||||||| | ||||| ||| |||||||||||||||    
T  2242027 atgtgagtatgagagagaaag--ttgtcacaaaaattgtcaaaaaatgattgttcaaatatcatttctctttt 2242097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 8645374 - 8645305
Alignment:
Q  12 atgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctctttt 84  Q
    |||| ||||||||||||| ||  |||| |||||||||||||||||||  |||| ||| |||||||||||||||    
T  8645374 atgtgagtatgagagagaaag--ttgtcacaaaagttgtcaaaaagt-gttgttcaaatatcatttctctttt 8645305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 27334899 - 27334854
Alignment:
Q  39 tacaaaagttgtcaaaaagtaattgtacaagtatcatttctctttt 84  Q
    |||||||||||||| ||| || |||||||| |||||||||||||||    
T  27334899 tacaaaagttgtcacaaaatagttgtacaaatatcatttctctttt 27334854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 27395639 - 27395594
Alignment:
Q  39 tacaaaagttgtcaaaaagtaattgtacaagtatcatttctctttt 84  Q
    |||||||||||||| ||| || |||||||| |||||||||||||||    
T  27395639 tacaaaagttgtcacaaaatagttgtacaaatatcatttctctttt 27395594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 83
Target Start/End: Original strand, 3180026 - 3180066
Alignment:
Q  43 aaagttgtcaaaaagtaattgtacaagtatcatttctcttt 83  Q
    |||||||||||||| | ||||||||| ||||||||||||||    
T  3180026 aaagttgtcaaaaaatgattgtacaaatatcatttctcttt 3180066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 11635550 - 11635606
Alignment:
Q  24 gagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctc 80  Q
    ||||||||  ||||| ||||||||||||||||| | ||||| ||| |||||||||||    
T  11635550 gagagagaaagttgtcacaaaagttgtcaaaaaatgattgttcaaatatcatttctc 11635606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 22573495 - 22573447
Alignment:
Q  33 ggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctct 81  Q
    ||||||||||||||||||  |||| ||||||||||| ||||||| ||||    
T  22573495 ggttgttacaaaagttgtataaaaataattgtacaaatatcattcctct 22573447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 31204804 - 31204885
Alignment:
Q  1 aataaaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctctttt 84  Q
    ||||||||||||| | | ||||||||||||||  || || |||||||| ||||||| |  ||||| || |||||||||||||||    
T  31204804 aataaaaacacatatgaatatgagagagagag--ttatttcaaaagttatcaaaaaatggttgtagaaatatcatttctctttt 31204885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 82
Target Start/End: Original strand, 31517202 - 31517242
Alignment:
Q  42 aaaagttgtcaaaaagtaattgtacaagtatcatttctctt 82  Q
    |||||||||||||||||  |||||||| |||||||||||||    
T  31517202 aaaagttgtcaaaaagtggttgtacaaatatcatttctctt 31517242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 33712376 - 33712320
Alignment:
Q  24 gagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctc 80  Q
    ||||||||  ||||| |||||||||||||||||||  |||| ||| |||||||||||    
T  33712376 gagagagaaagttgtcacaaaagttgtcaaaaagtggttgttcaaatatcatttctc 33712320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 8728573 - 8728652
Alignment:
Q  1 aataaaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctc 80  Q
    |||||||  |||||| |||| |||||||||||||||||| ||||||||||||||||||  |||||||| |||||||||||    
T  8728573 aataaaattacatgtgagtacgagagagagagggttgtttcaaaagttgtcaaaaagtggttgtacaaatatcatttctc 8728652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 30838359 - 30838438
Alignment:
Q  1 aataaaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctctt 82  Q
    ||||||||||||||| |||||||||||||   ||||||| |||||||||||||||||||  ||||||| |||||||||||||    
T  30838359 aataaaaacacatgtgagtatgagagagat--ggttgtttcaaaagttgtcaaaaagtagatgtacaaatatcatttctctt 30838438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 2629897 - 2629818
Alignment:
Q  1 aataaaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctc 80  Q
    |||||||| |||||| | ||||||||||||| ||||||| |||||||||||||||| |  |||||||| |||||||||||    
T  2629897 aataaaaaaacatgtgaatatgagagagagaaggttgtttcaaaagttgtcaaaaaatggttgtacaaatatcatttctc 2629818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 4800492 - 4800573
Alignment:
Q  1 aataaaaacacatgtaagtatgaga--gagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctc 80  Q
    ||||||||||||| | |||||||||  ||||||| |||||| ||||||||||||||||||| ||||| || |||||||||||    
T  4800492 aataaaaacacatatgagtatgagagagagagagagttgttccaaaagttgtcaaaaagtagttgtataaatatcatttctc 4800573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 611930 - 611861
Alignment:
Q  12 atgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctcttt 83  Q
    |||| ||||||||||||| ||  |||| ||||||||||||||||||||||||| ||| ||||||||||||||    
T  611930 atgtgagtatgagagagaaag--ttgtcacaaaagttgtcaaaaagtaattgttcaaatatcatttctcttt 611861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 43057512 - 43057434
Alignment:
Q  1 aataaaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctct 81  Q
    |||||||||| |||| |||||||||||| |||  || || ||||||||||||||||||  |||||||| ||||||||||||    
T  43057512 aataaaaacatatgtgagtatgagagagggag--ttatttcaaaagttgtcaaaaagtggttgtacaaatatcatttctct 43057434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 41621922 - 41621999
Alignment:
Q  1 aataaaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctc 80  Q
    ||||||| |||||||||||||||||||     ||||||| ||||||||||||||||||  |||||||| |||||||||||    
T  41621922 aataaaagcacatgtaagtatgagagatgt--ggttgtttcaaaagttgtcaaaaagtggttgtacaaatatcatttctc 41621999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 11148567 - 11148509
Alignment:
Q  24 gagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctctt 82  Q
    ||||||||  ||||| ||||||||||||||||| | ||||||||| |||||||||||||    
T  11148567 gagagagaatgttgtcacaaaagttgtcaaaaattgattgtacaaatatcatttctctt 11148509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 35570887 - 35570813
Alignment:
Q  4 aaaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctc 80  Q
    |||||||||||| ||||||||||||||  ||||||   ||||||| ||||||  ||||||||||| |||||||||||    
T  35570887 aaaaacacatgtgagtatgagagagag--ggttgtctaaaaagttatcaaaatttaattgtacaaatatcatttctc 35570813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 14780438 - 14780494
Alignment:
Q  26 gagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctctt 82  Q
    ||||||| ||| || |||||||||||||||||||  ||||||| |||||||||||||    
T  14780438 gagagagagttatttcaaaagttgtcaaaaagtagatgtacaaatatcatttctctt 14780494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 26754632 - 26754709
Alignment:
Q  1 aataaaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctc 80  Q
    ||||||||||||||| |||||  |||||||||||||||  | |||||||||||||  |  |||||||| |||||||||||    
T  26754632 aataaaaacacatgtgagtat--gagagagagggttgtctccaaagttgtcaaaatttggttgtacaaatatcatttctc 26754709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 34428198 - 34428154
Alignment:
Q  42 aaaagttgtcaaaaagtaattgtacaagtatcatttctcttttga 86  Q
    ||||||||||||||| || |||||||| |||||||||||||||||    
T  34428198 aaaagttgtcaaaaaatagttgtacaaatatcatttctcttttga 34428154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 35165759 - 35165676
Alignment:
Q  1 aataaaaacacatgtaagtatgagagagagagggttgttacaaaag-ttgtcaaaaagtaattgtacaagtatcatttctcttt 83  Q
    |||| ||| |||||| ||||| |||| |||||||||||| | |||| || ||||||| || |||||||| ||||||||||||||    
T  35165759 aatataaaaacatgtgagtataagagggagagggttgtttcgaaaggttatcaaaaaatagttgtacaaatatcatttctcttt 35165676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 84
Target Start/End: Complemental strand, 125130 - 125088
Alignment:
Q  42 aaaagttgtcaaaaagtaattgtacaagtatcatttctctttt 84  Q
    ||||||||||| |||||| |||||||| |||||||||||||||    
T  125130 aaaagttgtcacaaagtagttgtacaaatatcatttctctttt 125088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 15022237 - 15022291
Alignment:
Q  4 aaaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagt 58  Q
    ||||| ||| || ||||||||||| ||||| ||||| ||||||||||||||||||    
T  15022237 aaaaaaacaagtgagtatgagagaaagaggattgtttcaaaagttgtcaaaaagt 15022291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 19844340 - 19844386
Alignment:
Q  40 acaaaagttgtcaaaaagtaattgtacaagtatcatttctcttttga 86  Q
    ||||||||| ||||||| || |||||||| |||||||||||||||||    
T  19844340 acaaaagttatcaaaaaatagttgtacaaatatcatttctcttttga 19844386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 42446305 - 42446363
Alignment:
Q  23 agagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctct 81  Q
    |||||||||  |||||| |||||||||||||||| || |||| ||| ||||||||||||    
T  42446305 agagagagaaagttgttgcaaaagttgtcaaaaaatagttgttcaaatatcatttctct 42446363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 80
Target Start/End: Original strand, 15918020 - 15918061
Alignment:
Q  39 tacaaaagttgtcaaaaagtaattgtacaagtatcatttctc 80  Q
    |||||||||||||| ||| ||||||||||| |||||||||||    
T  15918020 tacaaaagttgtcacaaattaattgtacaaatatcatttctc 15918061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 29803263 - 29803222
Alignment:
Q  42 aaaagttgtcaaaaagtaattgtacaagtatcatttctcttt 83  Q
    ||||||||||||||| || |||||||| ||||||||||||||    
T  29803263 aaaagttgtcaaaaaatagttgtacaaatatcatttctcttt 29803222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 3109602 - 3109658
Alignment:
Q  24 gagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctc 80  Q
    ||||||||  ||||| ||||||||||||| ||| | ||||||||| |||||||||||    
T  3109602 gagagagaatgttgtcacaaaagttgtcacaaattgattgtacaaatatcatttctc 3109658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 4719706 - 4719650
Alignment:
Q  24 gagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctc 80  Q
    |||||| | |||||| ||||||||||||||||| |  |||||||| |||||||||||    
T  4719706 gagagaaaaggttgtcacaaaagttgtcaaaaattggttgtacaaatatcatttctc 4719650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 11306753 - 11306698
Alignment:
Q  24 gagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctc 80  Q
    ||||||||  ||||||||||| ||||| ||||||| ||||||||| |||||||||||    
T  11306753 gagagagaaagttgttacaaa-gttgttaaaaagtgattgtacaaatatcatttctc 11306698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 29463061 - 29462993
Alignment:
Q  12 atgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctc 80  Q
    |||| |||||||||||||||  ||||| ||||| ||||||||||| |  |||| ||| |||||||||||    
T  29463061 atgtgagtatgagagagagaaagttgtcacaaacgttgtcaaaaaattgttgttcaaatatcatttctc 29462993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 25507334 - 25507255
Alignment:
Q  1 aataaaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctc 80  Q
    |||||||  |||||| |||| |||||||||||||||||| ||||||||||||||||||  |||||||| |||||||||||    
T  25507334 aataaaattacatgtgagtacgagagagagagggttgtttcaaaagttgtcaaaaagtggttgtacaaatatcatttctc 25507255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 13453949 - 13454027
Alignment:
Q  1 aataaaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctct 81  Q
    ||||||||||||||| |||||||||||||||   ||||| |||||||||||||||||| ||||||||  ||||||||||||    
T  13453949 aataaaaacacatgtgagtatgagagagagaa--ttgtttcaaaagttgtcaaaaagtgattgtacagatatcatttctct 13454027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 22966863 - 22966782
Alignment:
Q  1 aataaaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctctttt 84  Q
    ||||||||||||||| | ||||||||||||  ||||||| |||||||| |||||||||  |||||||| |||||||||||||||    
T  22966863 aataaaaacacatgtgaatatgagagagag--ggttgtttcaaaagttatcaaaaagtggttgtacaaatatcatttctctttt 22966782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 31629681 - 31629604
Alignment:
Q  1 aataaaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctc 80  Q
    ||||||||||||||| ||||| |||||||   ||||||| ||||||||||||||||||| |||||||| |||||||||||    
T  31629681 aataaaaacacatgtgagtattagagagat--ggttgttccaaaagttgtcaaaaagtagttgtacaaatatcatttctc 31629604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 45376214 - 45376292
Alignment:
Q  4 aaaaacacatgtaagtatgaga--gagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctc 80  Q
    ||||| |||||| |||||||||  ||||||||||||| |||||||||||||||||||  |||||||| |||||||||||    
T  45376214 aaaaatacatgtgagtatgagagagagagagggttgtcacaaaagttgtcaaaaagtggttgtacaaatatcatttctc 45376292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 29472025 - 29472104
Alignment:
Q  1 aataaaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctcttt 83  Q
    ||||||||||||||| |||||  ||||||| |||||||| ||||||||||| |||||| ||| ||||| ||||||||||||||    
T  29472025 aataaaaacacatgtgagtat--gagagagggggttgtttcaaaagttgtc-aaaagtgattttacaaatatcatttctcttt 29472104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 31227546 - 31227622
Alignment:
Q  1 aataaaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctct 81  Q
    |||||||| |||||| ||||||||||||||    ||||| |||||||||||||||||| ||||||||  ||||||||||||    
T  31227546 aataaaaaaacatgtgagtatgagagagag----ttgtttcaaaagttgtcaaaaagtgattgtacacatatcatttctct 31227622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 9979173 - 9979094
Alignment:
Q  1 aataaaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctctt 82  Q
    ||||||||||||||| |||||||||||||   |||||| |||||| |||| |||||||  |||||||| |||||||||||||    
T  9979173 aataaaaacacatgtgagtatgagagagat--ggttgtcacaaaaattgtgaaaaagtggttgtacaaatatcatttctctt 9979094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 40106686 - 40106608
Alignment:
Q  1 aataaaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctct 81  Q
    ||||||||| |||||||||||||||||||   ||||||| || ||||||||||| |||  |||||||| ||||||||||||    
T  40106686 aataaaaacgcatgtaagtatgagagagat--ggttgtttcataagttgtcaaagagtggttgtacaaatatcatttctct 40106608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 24727605 - 24727661
Alignment:
Q  24 gagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctc 80  Q
    ||||||||| |||||| ||||||||||||||||||  |||||||| |||||||||||    
T  24727605 gagagagagtgttgtttcaaaagttgtcaaaaagtggttgtacaaatatcatttctc 24727661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 83
Target Start/End: Complemental strand, 41661389 - 41661330
Alignment:
Q  24 gagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctcttt 83  Q
    |||||||| |||| || ||| ||||||||||||||| ||||||||||||||| |||||||    
T  41661389 gagagagaaggttttttcaatagttgtcaaaaagtagttgtacaagtatcatctctcttt 41661330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 83
Target Start/End: Complemental strand, 44050071 - 44050012
Alignment:
Q  24 gagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctcttt 83  Q
    |||||||| |||||| ||||||||||||| ||| |  |||||||||||||||||||||||    
T  44050071 gagagagaaggttgtcacaaaagttgtcataaaatggttgtacaagtatcatttctcttt 44050012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 12 - 81
Target Start/End: Original strand, 7258567 - 7258634
Alignment:
Q  12 atgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctct 81  Q
    |||||||||||||||||| |   |||||||||||||||||||| ||| ||||||||| | ||||||||||    
T  7258567 atgtaagtatgagagagaaaa--ttgttacaaaagttgtcaaagagtgattgtacaaatgtcatttctct 7258634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 28481856 - 28481777
Alignment:
Q  1 aataaaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctctttt 84  Q
    ||||||||||||||| ||||||||||||||    ||||| |||||||||||||||| |  |||| ||| ||| |||||||||||    
T  28481856 aataaaaacacatgtgagtatgagagagag----ttgttccaaaagttgtcaaaaaatggttgttcaaatattatttctctttt 28481777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 34 - 84
Target Start/End: Complemental strand, 39147811 - 39147761
Alignment:
Q  34 gttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctctttt 84  Q
    ||||||||||||||||| ||||| || ||||||||||||||||||| ||||    
T  39147811 gttgttacaaaagttgtaaaaaaatagttgtacaagtatcatttctatttt 39147761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 84
Target Start/End: Original strand, 19695714 - 19695755
Alignment:
Q  43 aaagttgtcaaaaagtaattgtacaagtatcatttctctttt 84  Q
    |||||||||||||||| ||||||||| |||||||||||||||    
T  19695714 aaagttgtcaaaaagtgattgtacaaatatcatttctctttt 19695755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 31415239 - 31415287
Alignment:
Q  33 ggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctct 81  Q
    ||||||| ||||||||||||||||||||  |||||| ||||||||||||    
T  31415239 ggttgtttcaaaagttgtcaaaaagtaaacgtacaaatatcatttctct 31415287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 84
Target Start/End: Original strand, 27307236 - 27307306
Alignment:
Q  11 catgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctctttt 84  Q
    ||||| ||||||||||||| ||  |||| ||||||||||||| ||| | ||||||||| |||||||||||||||    
T  27307236 catgtgagtatgagagagaaag--ttgt-acaaaagttgtcacaaattgattgtacaaatatcatttctctttt 27307306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 4036903 - 4036948
Alignment:
Q  36 tgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctct 81  Q
    ||||| ||||||||| |||||||| |||||||| ||||||||||||    
T  4036903 tgttataaaagttgttaaaaagtagttgtacaaatatcatttctct 4036948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 15123933 - 15124007
Alignment:
Q  4 aaaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctc 80  Q
    |||||||||||| ||||||||||| |   | ||||| |||||||||||||||| |  |||||||| |||||||||||    
T  15123933 aaaaacacatgtgagtatgagagatat--gattgtttcaaaagttgtcaaaaaatggttgtacaaatatcatttctc 15124007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 82
Target Start/End: Original strand, 29871384 - 29871425
Alignment:
Q  41 caaaagttgtcaaaaagtaattgtacaagtatcatttctctt 82  Q
    |||||||||||| ||| ||||||||||| |||||||||||||    
T  29871384 caaaagttgtcataaactaattgtacaaatatcatttctctt 29871425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 84
Target Start/End: Original strand, 37731226 - 37731275
Alignment:
Q  35 ttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctctttt 84  Q
    |||| |||||||||||||||||||  |||| ||| |||||||||||||||    
T  37731226 ttgtcacaaaagttgtcaaaaagtggttgttcaaatatcatttctctttt 37731275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 37767781 - 37767838
Alignment:
Q  24 gagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctct 81  Q
    |||||||| | ||||| ||||||||||||||||||  ||||| || ||||||||||||    
T  37767781 gagagagatgattgtttcaaaagttgtcaaaaagtggttgtataaatatcatttctct 37767838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 43820756 - 43820813
Alignment:
Q  24 gagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctct 81  Q
    |||| ||| ||||||| |||||||||| ||||| | ||||||||| ||||||||||||    
T  43820756 gagaaagatggttgtttcaaaagttgtaaaaaaatgattgtacaaatatcatttctct 43820813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 5054196 - 5054248
Alignment:
Q  34 gttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctcttttga 86  Q
    ||||| ||||||||||||||||  ||||||||||| ||| |||| ||||||||    
T  5054196 gttgtcacaaaagttgtcaaaatataattgtacaaatattatttatcttttga 5054248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 5427248 - 5427296
Alignment:
Q  34 gttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctctt 82  Q
    ||||| |||||| || ||||||| ||||||||||| |||||||||||||    
T  5427248 gttgtcacaaaaattatcaaaaattaattgtacaattatcatttctctt 5427296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 11965833 - 11965793
Alignment:
Q  40 acaaaagttgtcaaaaagtaattgtacaagtatcatttctc 80  Q
    ||||||||||||||||||| ||||| ||| |||||||||||    
T  11965833 acaaaagttgtcaaaaagtgattgttcaaatatcatttctc 11965793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 15260363 - 15260307
Alignment:
Q  24 gagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctc 80  Q
    ||||||||| ||||| |||||||||||| ||||||  |||| ||| |||||||||||    
T  15260363 gagagagagagttgtcacaaaagttgtctaaaagtggttgttcaaatatcatttctc 15260307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 15610826 - 15610879
Alignment:
Q  1 aataaaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaa 56  Q
    |||||||| |||||| ||||||| ||||  ||||||||| ||||||||||||||||    
T  15610826 aataaaaaaacatgtgagtatgatagag--agggttgtttcaaaagttgtcaaaaa 15610879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 18531641 - 18531597
Alignment:
Q  40 acaaaagttgtcaaaaagtaattgtacaagtatcatttctctttt 84  Q
    |||||| |||||||||| || |||||||| |||||||||||||||    
T  18531641 acaaaaattgtcaaaaaatagttgtacaaatatcatttctctttt 18531597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 22303254 - 22303203
Alignment:
Q  28 gagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctc 80  Q
    ||||| |||||| |||||||||||||||| || |||||||| |||||||||||    
T  22303254 gagagtgttgtt-caaaagttgtcaaaaaatagttgtacaaatatcatttctc 22303203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 28544108 - 28544031
Alignment:
Q  1 aataaaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctc 80  Q
    ||||||||||||||| || ||||||||||   |||||| ||||||||||| ||||| |  | |||||| |||||||||||    
T  28544108 aataaaaacacatgtgagaatgagagagat--ggttgtcacaaaagttgtgaaaaaatggtagtacaaatatcatttctc 28544031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 79
Target Start/End: Complemental strand, 39285890 - 39285854
Alignment:
Q  43 aaagttgtcaaaaagtaattgtacaagtatcatttct 79  Q
    |||||||||||||||| ||||||||| ||||||||||    
T  39285890 aaagttgtcaaaaagtgattgtacaaatatcatttct 39285854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 47187518 - 47187593
Alignment:
Q  5 aaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctctt 82  Q
    ||||||||||||||||||||||| ||  ||||||| |||||||||| ||||||||||||||||| ||||||| |||||    
T  47187518 aaaacacatgtaagtatgagagaaag--ggttgtttcaaaagttgtgaaaaagtaattgtacaaatatcattcctctt 47187593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 50559217 - 50559287
Alignment:
Q  12 atgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctctttt 84  Q
    |||||||||||||||||| |   |||| ||||||||||||||||| || |||||||| |||||||||||||||    
T  50559217 atgtaagtatgagagagaaaa--ttgtcacaaaagttgtcaaaaaatagttgtacaaatatcatttctctttt 50559287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 31143347 - 31143267
Alignment:
Q  1 aataaaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctcttt 83  Q
    ||||||||||||||| ||||| |||||||   | ||||| |||||||||||||||| | ||||||||| ||||| ||||||||    
T  31143347 aataaaaacacatgtgagtattagagagat--gattgtttcaaaagttgtcaaaaaatgattgtacaaatatcacttctcttt 31143267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 19623246 - 19623325
Alignment:
Q  1 aataaaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctctt 82  Q
    |||||||| ||||||||||||||||||||     |||||  ||||||| ||||||||| ||||||||| |||||||||||||    
T  19623246 aataaaaagacatgtaagtatgagagagatta--ttgttttaaaagttatcaaaaagtgattgtacaaatatcatttctctt 19623325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 27718780 - 27718858
Alignment:
Q  1 aataaaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctct 81  Q
    |||||||||| |||| ||||||||||||| ||  |||| ||||||||||| | ||| | ||| ||||||||||||||||||    
T  27718780 aataaaaacatatgtgagtatgagagagaaag--ttgtcacaaaagttgttacaaaatgattatacaagtatcatttctct 27718858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 6977007 - 6976942
Alignment:
Q  1 aataaaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaa 68  Q
    ||||||||| ||||| ||||||| ||||||  |||||||  ||||||||||||||||| |||||||||    
T  6977007 aataaaaacgcatgtgagtatgatagagag--ggttgttttaaaagttgtcaaaaagtgattgtacaa 6976942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 9326979 - 9327056
Alignment:
Q  1 aataaaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctc 80  Q
    |||||||| |||||| ||||||||| |||   ||||||| ||||||||||| |||| | ||||||||| |||||||||||    
T  9326979 aataaaaagacatgtgagtatgagatagat--ggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctc 9327056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 38017941 - 38018001
Alignment:
Q  23 agagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctcttt 83  Q
    |||||||||| |||||| || ||||||||||| |||  |||||||| ||||||||||||||    
T  38017941 agagagagagagttgtttcataagttgtcaaagagtggttgtacaaatatcatttctcttt 38018001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 11323984 - 11323912
Alignment:
Q  1 aataaaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcattt 77  Q
    |||||||||||||| ||||||||||||||    |||||  |||||||||| |||||||  |||||||| ||||||||    
T  11323984 aataaaaacacatggaagtatgagagaga----gttgtatcaaaagttgttaaaaagtggttgtacaaatatcattt 11323912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 48405476 - 48405408
Alignment:
Q  12 atgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctctt 82  Q
    |||| ||||||||||||| ||  |||||||||||||||||| ||| |  |||||||| |||||||||||||    
T  48405476 atgtgagtatgagagagaaag--ttgttacaaaagttgtcacaaaatggttgtacaaatatcatttctctt 48405408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 81
Target Start/End: Original strand, 19150324 - 19150391
Alignment:
Q  12 atgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctct 81  Q
    |||||| ||||||||||| ||  |||| ||||||||||| ||||| | ||||||||| ||||||||||||    
T  19150324 atgtaaatatgagagagaaag--ttgtcacaaaagttgttaaaaaatgattgtacaaatatcatttctct 19150391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 80
Target Start/End: Original strand, 39284684 - 39284738
Alignment:
Q  26 gagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctc 80  Q
    ||||||| |||||| |||||||||||||||||| | | ||||| |||||||||||    
T  39284684 gagagagagttgtttcaaaagttgtcaaaaagtgaatatacaaatatcatttctc 39284738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 25188479 - 25188536
Alignment:
Q  23 agagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctc 80  Q
    |||||||||  |||||| |||||||||||||||| || |||| ||| |||||||||||    
T  25188479 agagagagaaagttgttgcaaaagttgtcaaaaaatagttgttcaaatatcatttctc 25188536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 41448191 - 41448248
Alignment:
Q  24 gagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctct 81  Q
    |||||||||||||||| ||||||||||  |||| |  |||||||| ||||||||||||    
T  41448191 gagagagagggttgtttcaaaagttgtttaaaaatggttgtacaaatatcatttctct 41448248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 41851019 - 41850945
Alignment:
Q  2 ataaaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttc 78  Q
    ||||||||||| || |||||||||| |||  ||||||| |||||||||||||||  |  |||||||| |||||||||    
T  41851019 ataaaaacacaagtgagtatgagagggag--ggttgtttcaaaagttgtcaaaatatggttgtacaaatatcatttc 41850945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 45528975 - 45529016
Alignment:
Q  42 aaaagttgtcaaaaagtaattgtacaagtatcatttctcttt 83  Q
    ||||||||||||||| || |||||||| ||||||||||||||    
T  45528975 aaaagttgtcaaaaaatagttgtacaaatatcatttctcttt 45529016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 5393849 - 5393905
Alignment:
Q  24 gagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctc 80  Q
    |||||||||||||||  |||||||||| | ||| | ||||||||| |||||||||||    
T  5393849 gagagagagggttgtcccaaaagttgtaagaaaatgattgtacaaatatcatttctc 5393905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 39629854 - 39629906
Alignment:
Q  24 gagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatt 76  Q
    |||||||| |||||| ||||||||||| ||||| || |||||||| |||||||    
T  39629854 gagagagaaggttgtcacaaaagttgtaaaaaaatagttgtacaaatatcatt 39629906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 39901660 - 39901587
Alignment:
Q  9 cacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctctttt 84  Q
    ||||||| ||||||||| ||| ||  ||||| ||||| || ||||||| | ||||||||| |||||||||||||||    
T  39901660 cacatgttagtatgagatagaaag--ttgttccaaaaattatcaaaaaatgattgtacaaatatcatttctctttt 39901587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 41443222 - 41443266
Alignment:
Q  40 acaaaagttgtcaaaaagtaattgtacaagtatcatttctctttt 84  Q
    ||||||||||||||||||| || || ||| |||||||||||||||    
T  41443222 acaaaagttgtcaaaaagtgatcgttcaaatatcatttctctttt 41443266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 52454125 - 52454169
Alignment:
Q  40 acaaaagttgtcaaaaagtaattgtacaagtatcatttctctttt 84  Q
    ||||||||||||| ||| | ||||||||| |||||||||||||||    
T  52454125 acaaaagttgtcacaaattgattgtacaaatatcatttctctttt 52454169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 53473651 - 53473603
Alignment:
Q  39 tacaaaagttgtcaaaaagtaattgtacaagtatcatttctcttttgat 87  Q
    |||||||||| ||| ||| | ||||||||| ||||||||||||||||||    
T  53473651 tacaaaagttatcacaaattgattgtacaaatatcatttctcttttgat 53473603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 35883601 - 35883680
Alignment:
Q  1 aataaaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctctt 82  Q
    ||||||||||||||| ||||||||||| |   ||||||| |||||||||||||||| ||||||||||| |||||||||||||    
T  35883601 aataaaaacacatgtgagtatgagagatat--ggttgtttcaaaagttgtcaaaaaataattgtacaaatatcatttctctt 35883680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 12021930 - 12022008
Alignment:
Q  1 aataaaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctctt 82  Q
    |||||||| |||| | |||||||||||    |||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  12021930 aataaaaatacatttgagtatgagagat---gggttgtttcaaaagttgtcaaaaagtaattgtaaaagtatcatttctctt 12022008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 42577551 - 42577468
Alignment:
Q  1 aataaaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctctttt 84  Q
    ||||||||||||||||| |||||||||||||   || || |||||||||| |||| || ||||||||| |||||||||||||||    
T  42577551 aataaaaacacatgtaaatatgagagagagaaaattatttcaaaagttgttaaaatgtgattgtacaaatatcatttctctttt 42577468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 1523288 - 1523364
Alignment:
Q  1 aataaaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttct 79  Q
    ||||||||||||||||||||||| ||||| |  ||| || |||||||| |||||||||  |||||||| ||||||||||    
T  1523288 aataaaaacacatgtaagtatgacagagata--gttatttcaaaagttatcaaaaagtggttgtacaaatatcatttct 1523364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 1922440 - 1922495
Alignment:
Q  24 gagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttct 79  Q
    ||||||||||||||| |||||| || ||||||||| ||||||||| ||||||||||    
T  1922440 gagagagagggttgtcacaaaaattatcaaaaagtgattgtacaaatatcatttct 1922495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 48858889 - 48858818
Alignment:
Q  12 atgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctcttttg 85  Q
    |||| ||||||||||||| ||  |||| |||||||||||||||||||  |||| ||| ||||||||||||||||    
T  48858889 atgtgagtatgagagagaaag--ttgtcacaaaagttgtcaaaaagtggttgttcaaatatcatttctcttttg 48858818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 84
Target Start/End: Complemental strand, 27742673 - 27742613
Alignment:
Q  24 gagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctctttt 84  Q
    ||||||||  ||||| |||||||||||||||||||  |||| ||| |||||||||||||||    
T  27742673 gagagagaaagttgtcacaaaagttgtcaaaaagtggttgttcaaatatcatttctctttt 27742613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 40809571 - 40809498
Alignment:
Q  1 aataaaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttct 79  Q
    |||||||||||||  ||||||||||||||   ||||||| ||||||||||||| |||| ||||||||| ||||||||||    
T  40809571 aataaaaacacat--aagtatgagagagat--ggttgtttcaaaagttgtcaataagt-attgtacaaatatcatttct 40809498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 82
Target Start/End: Original strand, 37843466 - 37843505
Alignment:
Q  43 aaagttgtcaaaaagtaattgtacaagtatcatttctctt 82  Q
    ||||||||||||||||| |||||||| |||||||||||||    
T  37843466 aaagttgtcaaaaagtagttgtacaaatatcatttctctt 37843505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 82
Target Start/End: Original strand, 39788765 - 39788800
Alignment:
Q  47 ttgtcaaaaagtaattgtacaagtatcatttctctt 82  Q
    |||||||||||||||||||||| |||||||||||||    
T  39788765 ttgtcaaaaagtaattgtacaaatatcatttctctt 39788800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 82
Target Start/End: Original strand, 33694220 - 33694274
Alignment:
Q  28 gagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctctt 82  Q
    ||||| ||||||  ||||||||| ||||||| ||||||||| |||||||||||||    
T  33694220 gagagagttgttttaaaagttgttaaaaagtgattgtacaaatatcatttctctt 33694274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 17082758 - 17082815
Alignment:
Q  24 gagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctct 81  Q
    ||||||||  ||||| |||||||||||||||||||| |||| ||| ||| ||||||||    
T  17082758 gagagagaaagttgtcacaaaagttgtcaaaaagtagttgttcaaatattatttctct 17082815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 35196178 - 35196130
Alignment:
Q  34 gttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctcttt 83  Q
    ||||||||||||||||||| ||| |  |||||||||||||||||||||||    
T  35196178 gttgttacaaaagttgtcataaaatg-ttgtacaagtatcatttctcttt 35196130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 43891763 - 43891792
Alignment:
Q  1 aataaaaacacatgtaagtatgagagagag 30  Q
    ||||||||||||||||||||||||||||||    
T  43891763 aataaaaacacatgtaagtatgagagagag 43891792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 83
Target Start/End: Original strand, 48983672 - 48983742
Alignment:
Q  11 catgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctcttt 83  Q
    ||||| ||||||||||||| ||  |||| ||||||||||||||||| |  |||| ||| ||||||||||||||    
T  48983672 catgtgagtatgagagagaaag--ttgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctcttt 48983742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 51231304 - 51231374
Alignment:
Q  5 aaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcattt 77  Q
    |||| |||||| |||||||||||||||  |||||  |||||||||| |||||||  |||||||| ||||||||    
T  51231304 aaaatacatgtgagtatgagagagaga--gttgtgccaaaagttgttaaaaagtggttgtacaaatatcattt 51231374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 83
Target Start/End: Complemental strand, 4154629 - 4154589
Alignment:
Q  43 aaagttgtcaaaaagtaattgtacaagtatcatttctcttt 83  Q
    |||||||||||||||||| ||||||  ||||||||||||||    
T  4154629 aaagttgtcaaaaagtaaatgtacatatatcatttctcttt 4154589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 16987485 - 16987445
Alignment:
Q  42 aaaagttgtcaaaaagtaattgtacaagtatcatttctctt 82  Q
    ||||||||| ||||| ||||||||||| |||||||||||||    
T  16987485 aaaagttgttaaaaaataattgtacaaatatcatttctctt 16987445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 17777466 - 17777517
Alignment:
Q  4 aaaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaa 56  Q
    ||||| |||||| |||||||||||||| || ||||| ||||||||||||||||    
T  17777466 aaaaaaacatgtgagtatgagagagag-ggcttgtttcaaaagttgtcaaaaa 17777517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 49931609 - 49931553
Alignment:
Q  24 gagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctc 80  Q
    ||||||||  ||||| ||||||||||| ||||| | ||||||||| |||||||||||    
T  49931609 gagagagaaagttgtcacaaaagttgttaaaaaatgattgtacaaatatcatttctc 49931553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 35206245 - 35206165
Alignment:
Q  1 aataaaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctcttt 83  Q
    ||||||||||||||| ||||| ||||||||||  ||||| |||||||| ||||||||| |||||||||  |||||||||||||    
T  35206245 aataaaaacacatgtgagtataagagagagag--ttgtttcaaaagttatcaaaaagtgattgtacaaacatcatttctcttt 35206165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 961349 - 961272
Alignment:
Q  5 aaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctctttt 84  Q
    |||| |||||| ||||||||||||||||  ||||| |||||||| ||||||| | ||||||||| ||| |||||||||||    
T  961349 aaaaaacatgtgagtatgagagagagag--ttgtttcaaaagttatcaaaaaattattgtacaaatattatttctctttt 961272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 50831781 - 50831829
Alignment:
Q  34 gttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctctt 82  Q
    |||||||||||||||||||||||||  |||||||| |||||||||||||    
T  50831781 gttgttacaaaagttgtcaaaaagtggttgtacaaatatcatttctctt 50831829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 56215682 - 56215605
Alignment:
Q  1 aataaaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctc 80  Q
    ||||||||||||||| |||||||||||||   | ||| | ||||||||||||||||||  |||||||| |||||||||||    
T  56215682 aataaaaacacatgtgagtatgagagagat--gattggttcaaaagttgtcaaaaagtggttgtacaaatatcatttctc 56215605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 13140297 - 13140369
Alignment:
Q  1 aataaaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcattt 77  Q
    ||||||||||||||| ||||||||||||||    ||||| |||||||||||||||| ||  ||||||| ||||||||    
T  13140297 aataaaaacacatgtgagtatgagagagag----ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 13140369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 20760301 - 20760252
Alignment:
Q  34 gttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctcttt 83  Q
    ||||| ||||||||||| ||||| ||||||||||| ||||||||||||||    
T  20760301 gttgtcacaaaagttgttaaaaaataattgtacaaatatcatttctcttt 20760252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 20766692 - 20766643
Alignment:
Q  34 gttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctcttt 83  Q
    ||||| ||||||||||| ||||| ||||||||||| ||||||||||||||    
T  20766692 gttgtcacaaaagttgttaaaaaataattgtacaaatatcatttctcttt 20766643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 42815479 - 42815401
Alignment:
Q  3 taaaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctcttt 83  Q
    |||||||| |||| ||||||||||||| ||  |||| ||||||||||| | ||| || |||||||| ||||||||||||||    
T  42815479 taaaaacatatgtgagtatgagagagaaag--ttgtcacaaaagttgttacaaaatagttgtacaaatatcatttctcttt 42815401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 51296222 - 51296267
Alignment:
Q  42 aaaagttgtcaaaaagtaattgtacaagtatcatttctcttttgat 87  Q
    ||||||||||| ||||| ||||||||| ||||||||||||||||||    
T  51296222 aaaagttgtcataaagtgattgtacaaatatcatttctcttttgat 51296267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 53191006 - 53190929
Alignment:
Q  1 aataaaaacacatgtaagtatgagagagagag-ggttgttacaaaagttgtcaaaaagtaattgtacaagtatcattt 77  Q
    ||||||||||||||| ||||||  |||||| | |||| ||||||||||||| |||||||  |||||||| ||||||||    
T  53191006 aataaaaacacatgtgagtatggaagagagggtggttattacaaaagttgttaaaaagtggttgtacaaatatcattt 53190929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 38864741 - 38864810
Alignment:
Q  12 atgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctcttt 83  Q
    |||| ||||||||||||| ||  |||| | ||||||||||| ||| ||||||||||| ||||||||||||||    
T  38864741 atgtgagtatgagagagaaag--ttgtcaaaaaagttgtcacaaaataattgtacaaatatcatttctcttt 38864810  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 17367501 - 17367446
Alignment:
Q  24 gagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttct 79  Q
    |||||||| ||||||| ||||||||||||||||||  ||||| || ||||||||||    
T  17367501 gagagagatggttgtttcaaaagttgtcaaaaagtggttgtataaatatcatttct 17367446  T

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Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 50890079 - 50890146
Alignment:
Q  12 atgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctctt 82  Q
    |||| ||||||||||||| ||  |||| ||||||||||||||||| || |||||||| |||||||||||||    
T  50890079 atgtgagtatgagagagaaag--ttgtcacaaaagttgtcaaaaa-tagttgtacaaatatcatttctctt 50890146  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 80
Target Start/End: Original strand, 3078904 - 3078979
Alignment:
Q  3 taaaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctc 80  Q
    |||||||| |||| ||||||||||||| ||  |||| ||||||||||| | ||| | ||||||||| |||||||||||    
T  3078904 taaaaacatatgtgagtatgagagagaaag--ttgtcacaaaagttgttacaaaatgattgtacaaatatcatttctc 3078979  T

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Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 9032846 - 9032780
Alignment:
Q  11 catgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctc 80  Q
    ||||||||||||||||||| ||  |||| ||||||||||||| ||| | ||||||||| |||||||||||    
T  9032846 catgtaagtatgagagagaaag--ttgt-acaaaagttgtcacaaattgattgtacaaatatcatttctc 9032780  T

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Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 12593606 - 12593685
Alignment:
Q  1 aataaaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctctt 82  Q
    ||||||||||||||||||||||||||| |   | || || ||||| |||||||||| ||||| || || |||||||||||||    
T  12593606 aataaaaacacatgtaagtatgagagaaat--gattatttcaaaaattgtcaaaaaataattatataaatatcatttctctt 12593685  T

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Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 81
Target Start/End: Original strand, 42915253 - 42915291
Alignment:
Q  43 aaagttgtcaaaaagtaattgtacaagtatcatttctct 81  Q
    |||||||||||||||| ||||||||| ||||||||||||    
T  42915253 aaagttgtcaaaaagtgattgtacaaatatcatttctct 42915291  T

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Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 83
Target Start/End: Complemental strand, 3223055 - 3222986
Alignment:
Q  11 catgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctcttt 83  Q
    ||||| ||||||||||||| ||  |||| ||||||||||||| ||| | ||||||||| ||||||||||||||    
T  3223055 catgtgagtatgagagagaaag--ttgt-acaaaagttgtcacaaattgattgtacaaatatcatttctcttt 3222986  T

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Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 5932769 - 5932835
Alignment:
Q  12 atgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctc 80  Q
    |||| ||||||||||||| ||  |||| |||||||||||||||||||  |||| ||| |||||||||||    
T  5932769 atgtgagtatgagagagaaag--ttgtcacaaaagttgtcaaaaagtggttgttcaaatatcatttctc 5932835  T

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Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 10762496 - 10762574
Alignment:
Q  1 aataaaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctct 81  Q
    |||||||||| |||| ||||| | |||||||   ||||| |||||||| |||||||||| ||||| || ||||||||||||    
T  10762496 aataaaaacatatgtgagtataaaagagagaa--ttgtttcaaaagttatcaaaaagtagttgtataaatatcatttctct 10762574  T

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Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 44272843 - 44272884
Alignment:
Q  42 aaaagttgtcaaaaagtaattgtacaagtatcatttctcttt 83  Q
    ||||||||||||||| || |||||||| ||||||||||||||    
T  44272843 aaaagttgtcaaaaaatagttgtacaaatatcatttctcttt 44272884  T

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Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 44368232 - 44368277
Alignment:
Q  39 tacaaaagttgtcaaaaagtaattgtacaagtatcatttctctttt 84  Q
    |||||||||||||| ||| | ||||||||| |||||||||||||||    
T  44368232 tacaaaagttgtcacaaattgattgtacaaatatcatttctctttt 44368277  T

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Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 54000764 - 54000694
Alignment:
Q  12 atgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctctttt 84  Q
    |||| ||||||||||||| ||  |||||| |||| ||||||||||||  |||| ||| |||||||||||||||    
T  54000764 atgtgagtatgagagagaaag--ttgttataaaaattgtcaaaaagtggttgttcaaatatcatttctctttt 54000694  T

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Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 7632493 - 7632537
Alignment:
Q  40 acaaaagttgtcaaaaagtaattgtacaagtatcatttctctttt 84  Q
    ||||||||||||||||| | ||||| ||| |||||||||||||||    
T  7632493 acaaaagttgtcaaaaattgattgttcaaatatcatttctctttt 7632537  T

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Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 15638200 - 15638160
Alignment:
Q  41 caaaagttgtcaaaaagtaattgtacaagtatcatttctct 81  Q
    |||||||||||||||| | ||||||||| ||||||||||||    
T  15638200 caaaagttgtcaaaaaatgattgtacaaatatcatttctct 15638160  T

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Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 25221749 - 25221797
Alignment:
Q  35 ttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctcttt 83  Q
    |||| ||||||||||| ||||||| ||| ||||| ||||||||||||||    
T  25221749 ttgtcacaaaagttgttaaaaagtgattatacaactatcatttctcttt 25221797  T

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Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 31221478 - 31221410
Alignment:
Q  12 atgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctcttt 83  Q
    |||||||||||||||||| ||  |||| | ||||||||||| ||| | ||||||||| ||||||||||||||    
T  31221478 atgtaagtatgagagagaaag--ttgt-ataaaagttgtcacaaattgattgtacaaatatcatttctcttt 31221410  T

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Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 40693638 - 40693694
Alignment:
Q  24 gagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctc 80  Q
    |||||||| ||||||  ||||| |||||||||| |||||||| || |||||||||||    
T  40693638 gagagagaaggttgtctcaaaaattgtcaaaaattaattgtataaatatcatttctc 40693694  T

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Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 42853977 - 42853937
Alignment:
Q  42 aaaagttgtcaaaaagtaattgtacaagtatcatttctctt 82  Q
    ||||||||||||||| || |||||||| |||||||||||||    
T  42853977 aaaagttgtcaaaaaatagttgtacaaatatcatttctctt 42853937  T

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Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 45652718 - 45652665
Alignment:
Q  1 aataaaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaa 56  Q
    ||||||||||||||| |||||  |||| ||||| ||||| ||||||||||||||||    
T  45652718 aataaaaacacatgtgagtat--gagatagaggtttgtttcaaaagttgtcaaaaa 45652665  T

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Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 51255813 - 51255744
Alignment:
Q  11 catgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctctt 82  Q
    ||||| ||||||||||||| ||  |||| ||||||||||||||||| |  |||| ||| |||||||||||||    
T  51255813 catgtgagtatgagagagaaag--ttgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctctt 51255744  T

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Target: scaffold1625 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold1625
Description:

Target: scaffold1625; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 779 - 854
Alignment:
Q  5 aaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctctt 82  Q
    ||||||||||| |||||||||||||   ||||||| |||||||||||||||| | ||||||||| ||||||| |||||    
T  779 aaaacacatgtgagtatgagagagat--ggttgtttcaaaagttgtcaaaaaatgattgtacaaatatcattcctctt 854  T

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Target: scaffold0128 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 11002 - 10932
Alignment:
Q  12 atgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctctttt 84  Q
    |||| ||||||||||||| ||  |||| |||||||||||||||||||  |||| ||| |||||||||||||||    
T  11002 atgtgagtatgagagagaaag--ttgtcacaaaagttgtcaaaaagtggttgttcaattatcatttctctttt 10932  T

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Target: scaffold0178 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 11547 - 11612
Alignment:
Q  1 aataaaaacacatgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaa 68  Q
    ||||||||||||| | |||||||||||||||   ||||| |||||||||||||||| ||| |||||||    
T  11547 aataaaaacacatttgagtatgagagagagaa--ttgtttcaaaagttgtcaaaaaataaatgtacaa 11612  T

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Target: scaffold0036 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 18069 - 18000
Alignment:
Q  12 atgtaagtatgagagagagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttctctttt 84  Q
    |||||||||||||||||| |   |||| || |||||||||||||| ||||||| ||| |||||||||||||||    
T  18069 atgtaagtatgagagagaaa--attgtcac-aaagttgtcaaaaaataattgtccaaatatcatttctctttt 18000  T

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Target: scaffold0086 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 15849 - 15901
Alignment:
Q  27 agagagggttgttacaaaagttgtcaaaaagtaattgtacaagtatcatttct 79  Q
    ||||||||||||| |||||||| ||||||| | ||||||||| ||| ||||||    
T  15849 agagagggttgtttcaaaagttatcaaaaaattattgtacaaatattatttct 15901  T

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