View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12967_high_4 (Length: 625)

Name: NF12967_high_4
Description: NF12967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12967_high_4
NF12967_high_4
[»] chr8 (4 HSPs)
chr8 (451-625)||(42383752-42383926)
chr8 (218-294)||(42387197-42387273)
chr8 (350-412)||(42387000-42387062)
chr8 (291-338)||(42387117-42387160)
[»] chr5 (4 HSPs)
chr5 (451-625)||(1748845-1749019)
chr5 (452-622)||(20686192-20686362)
chr5 (17-186)||(1752808-1752981)
chr5 (561-622)||(20686385-20686446)
[»] scaffold0035 (1 HSPs)
scaffold0035 (541-601)||(84872-84932)


Alignment Details
Target: chr8 (Bit Score: 171; Significance: 2e-91; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 451 - 625
Target Start/End: Complemental strand, 42383926 - 42383752
Alignment:
Q  451 tgagtggctgcttttgctatttcttttcgctattagttgaagattataatttgaaatagcgatgttgtgtcgttcctgctttgctttttccctattctat 550  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  42383926 tgagtggctgcttttgctatttcttttcgctattagttgaagattataatttgaaatagcgatgttgtgtcgttcttgctttgctttttccctattctat 42383827  T
Q  551 attatgattttttccaaatttgctaggaaacctacatcaaatcataaaggaaccataagttgttattactgctat 625  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42383826 attatgattttttccaaatttgctaggaaacctacatcaaatcataaaggaaccataagttgttattactgctat 42383752  T

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Target: chr8; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 218 - 294
Target Start/End: Complemental strand, 42387273 - 42387197
Alignment:
Q  218 gttttcctgtgacatggagaatgtggtggatgtattatgtcgagagatctataattctctgaggctattggtcgatg 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42387273 gttttcctgtgacatggagaatgtggtggatgtattatgtcgagagatctataattctctgaggctattggtcgatg 42387197  T

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Target: chr8; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 350 - 412
Target Start/End: Complemental strand, 42387062 - 42387000
Alignment:
Q  350 tcgattggagcaggtatcaattttctgatctgaatccacataagattgcttcgtttgtttgtt 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42387062 tcgattggagcaggtatcaattttctgatctgaatccacataagattgcttcgtttgtttgtt 42387000  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 291 - 338
Target Start/End: Complemental strand, 42387160 - 42387117
Alignment:
Q  291 gatgcatcgcagagaatgtcggtcgaagctaggctaccccattacatt 338  Q
    |||||||||||||||||||||    |||||||||||||||||||||||    
T  42387160 gatgcatcgcagagaatgtcg----aagctaggctaccccattacatt 42387117  T

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Target: chr5 (Bit Score: 171; Significance: 2e-91; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 451 - 625
Target Start/End: Complemental strand, 1749019 - 1748845
Alignment:
Q  451 tgagtggctgcttttgctatttcttttcgctattagttgaagattataatttgaaatagcgatgttgtgtcgttcctgctttgctttttccctattctat 550  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1749019 tgagtggctgcttttgctatttcttttcgctattagttgaagattataatttgaaatagcgatgttgtgtcgttcttgctttgctttttccctattctat 1748920  T
Q  551 attatgattttttccaaatttgctaggaaacctacatcaaatcataaaggaaccataagttgttattactgctat 625  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1748919 attatgattttttccaaatttgctaggaaacctacatcaaatcataaaggaaccataagttgttattactgctat 1748845  T

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Target: chr5; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 452 - 622
Target Start/End: Original strand, 20686192 - 20686362
Alignment:
Q  452 gagtggctgcttttgctatttcttttcgctattagttgaagattataatttgaaatagcgatgttgtgtcgttcctgctttgctttttccctattctata 551  Q
    ||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||||  |||||||||    
T  20686192 gagtggctgcttttgttatttattttcgctattatttgaagattataatttgaaatattgatgttgtgtcgttcctgctttgctttttcaatattctata 20686291  T
Q  552 ttatgattttttccaaatttgctaggaaacctacatcaaatcataaaggaaccataagttgttattactgc 622  Q
    | |||||||||||||||||||| ||||||||| | ||||||||||||||| |||||||||||| |||||||    
T  20686292 tcatgattttttccaaatttgccaggaaacctgcgtcaaatcataaaggagccataagttgttgttactgc 20686362  T

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Target: chr5; HSP #3
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 17 - 186
Target Start/End: Complemental strand, 1752981 - 1752808
Alignment:
Q  17 agttgagatttagattcgttacgttaggtggtttct-ttatcttggttttgttgttccgttttggaacacgagatctgaaatgggctgaacattatttgg 115  Q
    ||||||||||||||||||||| |||||||| ||||| ||   || || ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1752981 agttgagatttagattcgttatgttaggtgctttctcttgattttgtgttgttgttccgttttggaacacgagatctgaaatgggctgaacattatttgg 1752882  T
Q  116 gcttattgggtttgggctcttatatgggagaactgaatcaat-----atcaataaattttacaaaagagaatagtc 186  Q
    |||||||||||||||||||||||||||||  ||| |||||||     |||||||||| ||||||||||||||||||    
T  1752881 gcttattgggtttgggctcttatatggga--actcaatcaatcaataatcaataaatcttacaaaagagaatagtc 1752808  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 561 - 622
Target Start/End: Original strand, 20686385 - 20686446
Alignment:
Q  561 tttccaaatttgctaggaaacctacatcaaatcataaaggaaccataagttgttattactgc 622  Q
    ||||||||||||| ||||||||| | ||||||| ||||||| |||||||||||| |||||||    
T  20686385 tttccaaatttgccaggaaacctgcgtcaaatcgtaaaggagccataagttgttgttactgc 20686446  T

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Target: scaffold0035 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 541 - 601
Target Start/End: Complemental strand, 84932 - 84872
Alignment:
Q  541 cctattctatattatgattttttccaaatttgctaggaaacctacatcaaatcataaagga 601  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  84932 cctattctatattatgattttttccaaatttgctaggaaacctacatcaaatcataaagga 84872  T

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