View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12967_high_9 (Length: 366)
Name: NF12967_high_9
Description: NF12967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12967_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 94 - 293
Target Start/End: Complemental strand, 11433376 - 11433176
Alignment:
| Q |
94 |
gtgagttgtagtgtcacttaaaccaaactagactctt-aagtgttgagtttggtgcaatatagaaagataatatatcacatggctatcaaactcatgcat |
192 |
Q |
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| T |
11433376 |
gtgagttgtggtgtcacttaaaccaaactagactctttaagtgtagagtgtggtacaatatagaaagataatatatcacatggctatcaaactcatgcat |
11433277 |
T |
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| Q |
193 |
gcagttcagtacgattcctatgatggaggtccttctggacttaaggtaatcatcactcatttatcatttctttcaaagtatcattaatccatactaaaat |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
11433276 |
gcagttcagtacgattcctatgatggaggtccttctggacttaaggtaatcatcactcatttatcatttctttcaaagtataaataatccatactaaaat |
11433177 |
T |
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| Q |
293 |
a |
293 |
Q |
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| T |
11433176 |
a |
11433176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 94 - 293
Target Start/End: Original strand, 11561923 - 11562122
Alignment:
| Q |
94 |
gtgagttgtagtgtcacttaaaccaaactagactcttaagtgttgagtttggtgcaatatagaaagataatatatcacatggctatcaaactcatgcatg |
193 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||| |||| |||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11561923 |
gtgagttgtggtgtcacttaaaccaaactagactcttaagtgtagagtgtggtacgatatagaaagataatatatcacatggctatcaaactcatgcatg |
11562022 |
T |
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| Q |
194 |
cagttcagtacgattcctatgatggaggtccttctggacttaaggtaatcatcactcatttatcatttctttcaaagtatcattaatccatactaaaata |
293 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
11562023 |
cagttcagtacgattcctatgatggaggttcttctggacttaaggtaatcatcactcatttatcatttctttcaaagtataaataatccatactaaaata |
11562122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 11562449 - 11562498
Alignment:
| Q |
206 |
attcctatgatggaggtccttctggacttaaggtaatcatcactcattta |
255 |
Q |
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| T |
11562449 |
attcctatgatggaggtccttctggacttaaggtaatcatcactcattta |
11562498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 180 - 265
Target Start/End: Complemental strand, 11857385 - 11857300
Alignment:
| Q |
180 |
caaactcatgcatgcagttcagtacgattcctatgatggaggtccttctggacttaaggtaatcatcactcatttatcatttcttt |
265 |
Q |
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| T |
11857385 |
caaactcatgcatgcagttcaatatgattcctatggtggaggtccctctggattgaaggttatgatcacacatttctcatttcttt |
11857300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 94 - 195
Target Start/End: Original strand, 11552889 - 11552988
Alignment:
| Q |
94 |
gtgagttgtagtgtcacttaaaccaaactagactcttaagtgttgagtttggtgcaatatagaaagataatatatcacatggctatcaaactcatgcatg |
193 |
Q |
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||||||||||| |||| | |||||||||||||||| ||| ||| || |||||||||||||||| ||| ||||||||||||| |||||||||| ||| |
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| T |
11552889 |
gtgagttgtagagtcattgaaaccaaactagactccaaagagttaggtgtggtgcaatatagaaaaata--atatcacatggctcccaaactcatgtatg |
11552986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 11433469 - 11433438
Alignment:
| Q |
1 |
gtactacgtcccttgcaaaacacatgctatat |
32 |
Q |
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| T |
11433469 |
gtactacgtcccttgcaaaacacatgctatat |
11433438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 11561830 - 11561861
Alignment:
| Q |
1 |
gtactacgtcccttgcaaaacacatgctatat |
32 |
Q |
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| T |
11561830 |
gtactacgtcccttgcaaaacacatgctatat |
11561861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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