View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12967_low_1 (Length: 1184)
Name: NF12967_low_1
Description: NF12967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12967_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 704; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 704; E-Value: 0
Query Start/End: Original strand, 319 - 1166
Target Start/End: Complemental strand, 32257994 - 32257141
Alignment:
| Q |
319 |
cctaaatcggattatataatttggagtgtggtttcccgtttcc----------aatccgaaatactcatatatatacatggacggatgcatgtaggaggg |
408 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32257994 |
cctaaatcggattatataatttggagtgtggtttcccgtttcggattatatataatccgaaatactcatatatatacatggacggatgcatgtaggaggg |
32257895 |
T |
|
| Q |
409 |
tttctgggcacatgccccgcacataaatttttagaaattttgttgaattaggtataatataatataagttgacattttgaccacctgacccacacacatc |
508 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
32257894 |
tttctgggcacatgccccgcacataaatttttagaaattttgttgact-aggtataatataatataagttgacattttgaccacttgacccacacacatc |
32257796 |
T |
|
| Q |
509 |
atccagccttcctcattaggcccacaccacacccacacttgccacaacaaacccttagtacttctcaacataaaaagctttttcacatcaaataaagtaa |
608 |
Q |
| |
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|| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
32257795 |
atacaaccttcctcattaggcccacaccacacccacacttgccacaacaaaccctta---cttctcaacataaaaagatttttcacatcaaataaagtaa |
32257699 |
T |
|
| Q |
609 |
aaaacaacaatcaagagagaccgcatacgtgagaaatgagaacacatgtaacccctgagaaataaatgattggttagttcttctggagaggaaatggttg |
708 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32257698 |
aaaacaacaatcaagagagaccgcatacgtgagaaatgagaacacatgtaacccctgagaaataaatgattggttagttcttctggagaggaaatggttg |
32257599 |
T |
|
| Q |
709 |
tttagttattaatatacactgatatttttactgatattaaaaatgagaaaatcattcaatattttcaaaaatgaaatgtaacatataattcatgctaagt |
808 |
Q |
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| T |
32257598 |
cttagttattaatatacactgatatttttactgatattaaaaatgagaaaatcattcaatatttttaaaaatgaaatgtaacatataattcatgctaagt |
32257499 |
T |
|
| Q |
809 |
ttatatatatggtgtccccactatttgaactttttggatctgtcaatgtttgtgtgtgtgtataatatggacacacacgatcaggtttcccataatcaga |
908 |
Q |
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||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
32257498 |
ttatatatatggtgtccccactattcgaactttttggatccatcaatgtttgtgtgtgtgtataatatggacacgcacgatcaggtttcccataatcaga |
32257399 |
T |
|
| Q |
909 |
cattatctcaccacctttctcacattccactccatacccctaatnnnnnnnccctcatttcttgaaaacttgatttcttagcacattccaaacatcaatg |
1008 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32257398 |
cattatctcaccacctttctcacattctactccatactcctaataaaaaaaacctcatttcttgaaaacttgatttcttagcacattccaaacatcaatg |
32257299 |
T |
|
| Q |
1009 |
gactttatatatactatttttcgaatgtaaaagtaatgtgactacaaaaccttcctaattcaatttccatgcattttcacttaaatcatgatgtaatctt |
1108 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
32257298 |
gactttatatatactattttccgaatgtaaaagtaatgtgactacaaaaccttcctaattcgatttccatgcattttcacttaaatcatgatgtaatctt |
32257199 |
T |
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| Q |
1109 |
agcaattgtactaaaaattgtcaaagtaataaatataattcatatccatagggactgt |
1166 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
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| T |
32257198 |
agcaattgtactaaaaactgtcaaagtaataaatataattcgtatccatagggactgt |
32257141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 32258325 - 32258039
Alignment:
| Q |
1 |
aggctgtatgggataaacaagttaaattgtttcagcttgcagatattctgatatgaatatgaaactctct--gaattataagttcagagcaaaacataaa |
98 |
Q |
| |
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|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
32258325 |
aggctgtatggggtaaactagttaaattgtttcagcttgcagatattctgatatgaatatgaaactctctctgaattataagttcagagcaaaacataaa |
32258226 |
T |
|
| Q |
99 |
gtacaatgctttatagaagcaatggataattctatactgcttgcttaataatctttgctatattctacctagcggactcagtatgtatgtttaatctagt |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
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| T |
32258225 |
gtacaatgctttatagaagcaatggataattctatactgcttgcttaataatctttgctatattctacctagcggattcagtatgtatgtttaatctatt |
32258126 |
T |
|
| Q |
199 |
ttactcgttagagattttataatctgaaatgtatttaacggtttttgtattataaaattggaaatatatatttttcccttttgctag |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
32258125 |
ttactcgttagagattttataatctgaaatgtatttaacggtttttgtattataaaattggaaatatatatttttcctttttgctag |
32258039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 978 - 1012
Target Start/End: Complemental strand, 29157789 - 29157755
Alignment:
| Q |
978 |
ttgatttcttagcacattccaaacatcaatggact |
1012 |
Q |
| |
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|||||||||||||||||||||| |||||||||||| |
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| T |
29157789 |
ttgatttcttagcacattccaagcatcaatggact |
29157755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 700 - 772
Target Start/End: Complemental strand, 34962342 - 34962267
Alignment:
| Q |
700 |
aaatggttgtttagttattaatatacactgatat---ttttactgatattaaaaatgagaaaatcattcaatattt |
772 |
Q |
| |
|
||||| ||||||||||||| ||||| | ||| || ||||| ||||||| |||| |||||||||||||||||||| |
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| T |
34962342 |
aaatgattgtttagttatttatatagaatgagatactttttattgatattgaaaacgagaaaatcattcaatattt |
34962267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 729 - 772
Target Start/End: Original strand, 42164085 - 42164128
Alignment:
| Q |
729 |
gatatttttactgatattaaaaatgagaaaatcattcaatattt |
772 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
42164085 |
gatatttttattgatattaaaaatgagaaaatcattcaaaattt |
42164128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 733 - 779
Target Start/End: Complemental strand, 26571685 - 26571639
Alignment:
| Q |
733 |
tttttactgatattaaaaatgagaaaatcattcaatattttcaaaaa |
779 |
Q |
| |
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|||||| ||| ||| |||||||||||||||||| ||||||||||||| |
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|
| T |
26571685 |
tttttattgagattgaaaatgagaaaatcattcgatattttcaaaaa |
26571639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 706 - 778
Target Start/End: Complemental strand, 27907321 - 27907249
Alignment:
| Q |
706 |
ttgtttagttattaatatacactgatatttttactgatattaaaaatgagaaaatcattcaatattttcaaaa |
778 |
Q |
| |
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||||||||||| | ||||| | ||||||||| || |||| ||||||| ||||||||||||||||||||||| |
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| T |
27907321 |
ttgtttagttacttatatagagagatatttttgttggtattgaaaatgaaaaaatcattcaatattttcaaaa |
27907249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 729 - 778
Target Start/End: Complemental strand, 15844315 - 15844266
Alignment:
| Q |
729 |
gatatttttactgatattaaaaatgagaaaatcattcaatattttcaaaa |
778 |
Q |
| |
|
|||||||| | ||| ||| ||||||||||||| ||||||||||||||||| |
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|
| T |
15844315 |
gatattttaattgacatttaaaatgagaaaataattcaatattttcaaaa |
15844266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 902 - 945
Target Start/End: Original strand, 36026892 - 36026935
Alignment:
| Q |
902 |
aatcagacattatctcaccacctttctcacattccactccatac |
945 |
Q |
| |
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|||||||||| | |||||| |||||||||||||||||||||||| |
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| T |
36026892 |
aatcagacatcacctcacctcctttctcacattccactccatac |
36026935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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