View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12967_low_13 (Length: 271)
Name: NF12967_low_13
Description: NF12967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12967_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 1684630 - 1684879
Alignment:
| Q |
1 |
aacaattaaagacctgccggtagtgccatgaaataccaacattgttatcagaacaatggcagcaaagaaaatggcctcaaggagaagccaaaaccccata |
100 |
Q |
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| T |
1684630 |
aacaattaaagacctgccggtagtgccatgaaataccaacattgttatcagaacaatggcagcaaagaaaatagcctcaaggagaagccaaaaccccata |
1684729 |
T |
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| Q |
101 |
tccttctgaaattagag--nnnnnnngtagtgagtagcagaagaatataaatggttacattaacaagtgacaatatttatcattttacacaaccatctca |
198 |
Q |
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| T |
1684730 |
tccttctgaaattagagaaaaaaaaagtagtgagtagcagaagaatataaatggttacattaacaagtgacaatatttatcattttacacaac-----ca |
1684824 |
T |
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| Q |
199 |
tctcttaagtataaagataaaacttatgcgaataataacacatcatgaacttaat |
253 |
Q |
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| T |
1684825 |
tctcttaagtataaagataaaacttatgcgaataataacacatcatgaacttaat |
1684879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 1700179 - 1700245
Alignment:
| Q |
21 |
tagtgccatgaaataccaacattgttatcagaacaatggcagcaaagaaaatggcctcaaggagaag |
87 |
Q |
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| T |
1700179 |
tagtgccatgaagtgccaacattgttattagaacaatgacagcaaagaaaatagcctcgatgagaag |
1700245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 1695053 - 1695110
Alignment:
| Q |
1 |
aacaattaaagacctgccggtagtgccatgaaataccaacattgttatcagaacaatg |
58 |
Q |
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| T |
1695053 |
aacaattaaagacctcttggtagtgccatgtaatgccaacattgttatcagaacaatg |
1695110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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