View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12967_low_15 (Length: 250)
Name: NF12967_low_15
Description: NF12967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12967_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 62; Significance: 7e-27; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 148 - 221
Target Start/End: Original strand, 45978125 - 45978198
Alignment:
| Q |
148 |
tagataaggcttaaagtgacaaaatacaaacaacaatttgacaacatttaattttcaaataaatcgcgacccaa |
221 |
Q |
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| T |
45978125 |
tagataaggcataaagtgacaaaatacaaacaacaacttaacaacatttaattttcaaataaatcgcgacccaa |
45978198 |
T |
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Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 45976712 - 45976773
Alignment:
| Q |
38 |
tgaatttactcgtagatagggatagaaatcatattgaaatggacggattccatttcaatcta |
99 |
Q |
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| T |
45976712 |
tgaatttactagtagatagggatagaaatcatattgaaatggacggattccatttcaatcta |
45976773 |
T |
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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 114 - 156
Target Start/End: Original strand, 45977896 - 45977938
Alignment:
| Q |
114 |
gattccaaataaataatgcaatggagttaaataatagataagg |
156 |
Q |
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| T |
45977896 |
gattccaaacaaataatgcaatggagttaaataatagataagg |
45977938 |
T |
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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 89
Target Start/End: Original strand, 45977863 - 45977902
Alignment:
| Q |
50 |
tagatagggatagaaatcatattgaaatggacggattcca |
89 |
Q |
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| T |
45977863 |
tagataaggatagaaatcatattgaaatagacggattcca |
45977902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 117 - 244
Target Start/End: Original strand, 32463132 - 32463259
Alignment:
| Q |
117 |
tccaaataaataatgcaatggagttaaataatagataaggcttaaagtgacaaaatacaaacaacaatttgacaacatttaattttcaaataaatcgcga |
216 |
Q |
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| T |
32463132 |
tccaaacaaataatacaatgaagttaaacaatagataaggcaaaaggtgacaaaatacaaacaacgacttgacaacaattaatttccaaacagatcgcag |
32463231 |
T |
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| Q |
217 |
cccaacttttccaacaactctctgctcc |
244 |
Q |
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| T |
32463232 |
cccaacttttccaacagctctttgctcc |
32463259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 117 - 194
Target Start/End: Complemental strand, 36565097 - 36565020
Alignment:
| Q |
117 |
tccaaataaataatgcaatggagttaaataatagataaggcttaaagtgacaaaatacaaacaacaatttgacaacat |
194 |
Q |
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| T |
36565097 |
tccaaacagataatgcaatggagttaaataatagataaggcacaaagtgacaaaatacaaacaacgatttgacaacat |
36565020 |
T |
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