View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12967_low_17 (Length: 238)
Name: NF12967_low_17
Description: NF12967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12967_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 21 - 222
Target Start/End: Original strand, 4092527 - 4092728
Alignment:
| Q |
21 |
gaggaaaagatagtactgctttatacgatggtttatctaaccttgccgaatttcattttttgacaaaaggataaggttggaatgatgattggttaaatgt |
120 |
Q |
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| T |
4092527 |
gaggaaaagatagtactgctttatacgatggtttatctagccttgccgaatttcattttttgacaaaaggataaggttggaatgatgattggttaaatgt |
4092626 |
T |
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| Q |
121 |
gcactgtgtcatgtttgcatttttcaagggttggtgaaattgttttgtcccaaagatatcatataattacctaggtaggaagtggatggattacgtgctc |
220 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4092627 |
gcaccgtgtcatgtttgcatttttcaagggttggtgaaattgttttgtcccaaagatatcatataattacctaggtaggaagtggatggattacgtgctc |
4092726 |
T |
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| Q |
221 |
tt |
222 |
Q |
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|| |
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| T |
4092727 |
tt |
4092728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 21 - 211
Target Start/End: Original strand, 4082834 - 4083024
Alignment:
| Q |
21 |
gaggaaaagatagtactgctttatacgatggtttatctaaccttgccgaatttcattttttgacaaaaggataaggttggaatgatgattggttaaatgt |
120 |
Q |
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||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
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| T |
4082834 |
gaggaaaagatagtactgctttatatgatggtttatctagccttgccgaatttcattttttgacaaaaggataaggatggaatgatgattggttaaaagt |
4082933 |
T |
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| Q |
121 |
gcactgtgtcatgtttgcatttttcaagggttggtgaaattgttttgtcccaaagatatcatataattacctaggtaggaagtggatggat |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
4082934 |
acactgtgtcatgtttgcatttttcaagggttggtgaaattattttgtcccaaagatatcatataattacctaggtaggaaatggatggat |
4083024 |
T |
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